PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00085.1_g00027.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 282aa    MW: 32543.6 Da    PI: 8.1137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00085.1_g00027.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-066182223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C+ Cg sF  + +Lk+H+++H
  Sme2.5_00085.1_g00027.1 61 VCEECGVSFQKPAHLKQHMQSH 82
                             6*******************99 PP
2zf-C2H218.94.1e-0688112123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++C+  dC  s++rk++L+rH+ +H
  Sme2.5_00085.1_g00027.1  88 FVCHvnDCQSSYRRKDHLTRHLLLH 112
                              89********************998 PP
3zf-C2H215.26.1e-05117142123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              ++Cp   C+ +Fs + n++rH +  H
  Sme2.5_00085.1_g00027.1 117 FQCPvdGCKSTFSFQGNMTRHVKEmH 142
                              89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5171643IPR007087Zinc finger, C2H2
SMARTSM00355261638IPR015880Zinc finger, C2H2-like
SMARTSM003550.00766082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5266087IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-96187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-1068120No hitNo description
PROSITE profilePS501578.99588112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-988112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05288112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5114143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.9E-5115143No hitNo description
SMARTSM003550.0016117142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307117147IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-5154190No hitNo description
SMARTSM0035511156177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5167205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035514183209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGEEQREVIF RDIRRYYCEF CGLCRSKKSL ISSHIQSHHK DEIESRKDEA TEDAKRKEGN  60
VCEECGVSFQ KPAHLKQHMQ SHSLERPFVC HVNDCQSSYR RKDHLTRHLL LHQEKLFQCP  120
VDGCKSTFSF QGNMTRHVKE MHDQSASPVV ELPKEYVCSE AGCGKRSNLA QHIKAVHVGA  180
KPFSCSISGC SMKFAFKHVR DKHEKSGCHV YTSGDFEEAD EQFLSRPRGG RKREPTLFES  240
IMRKRIRPPS GTDPVFNQTP EYHSWLRSVE SDNQTVESDN QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-146420519157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-146420519157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821791e-164DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543989.11e-102PREDICTED: transcription factor IIIA isoform X1
SwissprotQ84MZ42e-50TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1U8EJC51e-101A0A1U8EJC5_CAPAN; transcription factor IIIA isoform X1
TrEMBLA0A2G3BI731e-101A0A2G3BI73_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000185591e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.26e-53transcription factor IIIA