PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00064.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 282aa    MW: 30744.8 Da    PI: 7.8786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00064.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.1e-314107199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++
  Sme2.5_00064.1_g00014.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallke 99 
                              ++++ql+q ++e++l+++
  Sme2.5_00064.1_g00014.1  90 SGNWQLCQNAVEAVLRGT 107
                              ***********9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.7E-871282IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7283109IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPQH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLRGTPIT PIASEVAVNN  120
NGPPLKLPYD IRHINKDENS TKSSHLHRVR NRCRFKRSGI DKAQSTKPNR VCSGSGDESA  180
HEKVNWSTSH ESSLSHQSEE AAAAAATAAV APNLECESRE LAEVEDSAMA EPAKEDGEIG  240
LELTLGFSSF ATADDKLKKT KRNQPAQLVD DAGECKIELG LH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-159HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363116.11e-163PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-91LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM1AYC31e-162M1AYC3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329381e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-87LOB domain-containing protein 41