PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00057.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 344aa    MW: 38752.9 Da    PI: 7.1426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00057.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13164211355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Sme2.5_00057.1_g00016.1 164 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 211
                              6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-13166215No hitNo description
SuperFamilySSF474593.4E-17166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEYYGFNQQW PISSFDELSA ISIATSFGHD NNFHESFMSH QPILGHKRPV ELSQIVEERP  60
PKNSKTSHTW NNNIENDQIL SSNYSHLINS SNNFTNQQVV TMKPKEETAL SSSSITFGPD  120
NHHNTMVCHQ DSFANQNYMF KAANNSCQGA NKSISTNGKL TQAQDHIIAE RKRREKLSQR  180
FIALSALIPG LKKMDKASVL GDAIKYLKQL QEKVKTLEEQ TKKKSMESVV FVKKYEIYGD  240
GENSSSDENC SSGTVPVDEA LPEIEARISE KDVLIRIHCE KRKGIVEKTV AQIEKIHLSV  300
INTCALSFGT SALDITIIAQ MDEEFAMTVK DLVKNLRSAL KMFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12165225869Transcription factor MYC2
5gnj_B1e-12165225869Transcription factor MYC2
5gnj_E1e-12165225869Transcription factor MYC2
5gnj_F1e-12165225869Transcription factor MYC2
5gnj_G1e-12165225869Transcription factor MYC2
5gnj_I1e-12165225869Transcription factor MYC2
5gnj_M1e-12165225869Transcription factor MYC2
5gnj_N1e-12165225869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-164HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367079.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_015160709.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0726e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLM1A2910.0M1A291_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000130740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-67bHLH family protein