 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_00039.1_g00006.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
TALE |
| Protein Properties |
Length: 365aa MW: 41520.2 Da PI: 5.9671 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00039.1_g00006.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.7 | 2.3e-09 | 292 | 326 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++e+ LA+++gL+++q+ +WF N+R ++
Sme2.5_00039.1_g00006.1 292 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 326
669*****************************885 PP
|
| 2 | ELK | 37.9 | 3.8e-13 | 246 | 267 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++LlrKYsgyL+sLkqE+s
Sme2.5_00039.1_g00006.1 246 ELKNHLLRKYSGYLSSLKQELS 267
9*******************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MENNYNNNEV GENSGGQRGY FIYGGSQVPV GGWGVGGRSS GGGGDCYDPM IVKTEGGSTS 60
QHHHDHTFHY PYIIRHHHQT VQNHHQESTE TSPSAPTGEV LEALKAKIIA HPQCSNLLDA 120
YMDCQKVGAP PEVAARLSAV RQEFEARQRA SLTDRDVSKD PELDQFMEAY YDMLVKYREE 180
LTRPLQEAME FMQKIEAQLN MLGNAPDRIF NSEDKCEGVG SSEEDQENSG GETELAEIDP 240
RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLINWWELH YKWPYPSESE 300
KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNAAALY MDGHYMGESP 360
FRLGQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KP335125 | 0.0 | KP335125.1 Solanum tuberosum knox variant X1 (POTH20) mRNA, complete cds, alternatively spliced. |
