PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00039.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 29803.6 Da PI: 8.8483

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00039.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	113	167	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L rqV vWFqNrRa+ k Sme2.5_00039.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSTQKRDLARRLSLRPRQVEVWFQNRRARTK 167 788899***********************************************98 PP
2	HD-ZIP_I/II	112.8	2.1e-36	113	201	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+keq +LE+sF+++++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+++e L++ y++l+een+rL ke ++ Sme2.5_00039.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSTQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVNCEILRKYYEELEEENRRLIKEIQD 198 69************************************************************************************ PP HD-ZIP_I/II 87 Lree 90 L+ + Sme2.5_00039.1_g00005.1 199 LK-S 201 *9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-17	104	167	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-18	107	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	109	169	IPR001356	Homeobox domain
SMART	SM00389	1.1E-13	111	173	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	113	167	IPR001356	Homeobox domain
CDD	cd00086	1.24E-12	113	170	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-14	169	212	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.9E-7	169	202	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MICNTRLSLS LGSSSPPHQN NKKRKLSTDD DNQELALCLS TSSEFTNNCD NRINPQLLGV 60 NSSISSFSNT SSVKRERDAR SIEEEVEILE TKKVVLISPK GLIDDDDDDY RTRKKLRLTK 120 EQYDVLEDSF KQHTTLNSTQ KRDLARRLSL RPRQVEVWFQ NRRARTKLKQ TEVNCEILRK 180 YYEELEEENR RLIKEIQDLK SLKMSAPFRV QLSAATLSIC PSCERNYGGA AATDNSKKIS 240 FSIGDQKPHV YHGIHHQLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	116	RTRKKLR
2	111	117	TRKKLRL
3	161	169	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238055.1	1e-125	homeobox-leucine zipper protein HAT22-like
TrEMBL	A0A3Q7G9I8	1e-124	A0A3Q7G9I8_SOLLC; Uncharacterized protein
STRING	Solyc04g077220.2.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-40	HD-ZIP family protein