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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00038.1_g00016.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
WRKY |
Protein Properties |
Length: 367aa MW: 40385.6 Da PI: 10.2757 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00038.1_g00016.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.7 | 1.8e-31 | 295 | 352 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+
Sme2.5_00038.1_g00016.1 295 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHS 352
99************************988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MAVDLMTTGY RNDSFSSKME ETAVQEAAAA GLQSVEKLIR LLSQSHQHQH QQQQHQKPNF 60 QDSSSSSLTN SSVSADYQAV ADAAVNKFKK FISLLDKNRT GHARFRRGPI TSRPPPPPPP 120 PPSSLSKPQQ NKLQLQQPIK NQNPQIEEIE KSQTTKIYCP TPIQRLPPLP HNHLQIVKNG 180 SIERKEASTT INFASPSPAT SFMSSLTGET ESLQQSLSSG FQITNLSQVS SAGRPPLSTS 240 SFKRKCSSMD DAALKCSSAG GSSGRCHCPK KRKSRVKRVV RVPAISMKMA DIPPDDYSWR 300 KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPAM LIVTYEGEHN HSHSITETPA 360 AHVLESS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU056914 | 0.0 | EU056914.1 Solanum tuberosum WRKY transcription factor 2 mRNA, complete cds. |