PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00025.1_g00019.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 308aa    MW: 35469.5 Da    PI: 7.9244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00025.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.3e-121152344
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             i+ +  r+ tf kR++g+lKK +E  +LC+++  +i++++++
  Sme2.5_00025.1_g00019.1 11 ISKEKSRNATFKKRKEGLLKKLYEFTTLCNVNGVMILYGPKQ 52
                             7888999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.385151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-11159IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-15161IPR002100Transcription factor, MADS-box
CDDcd002661.38E-17283No hitNo description
PRINTSPR004042.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGVMILYGP KQANGYASNP  60
EIWTNSTGNS TITKSSRQEE IQNLIDEYKK KNSLQSSSTK TFGLSDYFVD RSNKVEEELI  120
KLKKMNMEKK YPCWLEFMDQ LPKFELRNFL TFLDDKVENV KFRINLLKGN FSMIEGEMID  180
LGGGQATRLS QLTHYNDNPM VQELGDYNYC QQFQAPIIYS IVNHQEMMML MMSENDWQGA  240
SSSSSVGIGN NNIRCTLMKY ETMMGGNNNE LTYSSYVAPT ILQPNLMMSS AMPQIQHDEQ  300
HEAKYSSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769741.11e-128floral homeotic protein AGAMOUS-like
TrEMBLM1CBS41e-134M1CBS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641201e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-17M-type_MADS family protein