PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00022.1_g00015.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 228aa MW: 24828.5 Da PI: 9.0961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00022.1_g00015.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Sme2.5_00022.1_g00015.1 57 FSCNYCQRKFYSSQALGGHQNAH 79 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-6	54	84	No hit	No description
PROSITE profile	PS50157	11.427	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEVQVCSNNN QTSNEQENDD LILDLSLDHG PKSNIQTSSS DASRSAGNNN ESEPRVFSCN 60 YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ KISAAAFGYD KYSSMASLPL HGSFNRSLGI 120 QVHSMIHKPA NGANFGAPSL YGHPGWAIRK PIDQQPAIGR LSTADTNNYH VAATSSGGGA 180 ARFDNIIQKF PVVQVDGISP YRWDNGSGPV QPKTNAEELK KLDLSLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341365.1	1e-120	PREDICTED: zinc finger protein 1
TrEMBL	M1B3Y0	1e-119	M1B3Y0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400036628	1e-120	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	5e-44	C2H2 family protein