PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00021.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 377aa    MW: 42188 Da    PI: 8.4918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00021.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06141164123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y+C+ Cg++F ++ +L++H++  H
  Sme2.5_00021.1_g00009.1 141 YPCTLCGEVFQSPIHLEQHQSIkH 164
                              99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026141164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097141169IPR007087Zinc finger, C2H2
PROSITE patternPS000280143164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.101.5E-5166281IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.06E-13166376No hitNo description
Gene3DG3DSA:3.90.228.104.3E-4312376IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MASLLRPLFS SFLSLLFLLL HLGCFFSSSS QNQPSKKRKL SSHRDSSPPP PPTRLKSSTA  60
KTISSSWSYI KRIFSSNKPD PVQKINSPAH HNPSIPSPSS STRSLQKPIS SDDPINRSVS  120
PIPESDIASD QLFLPLRNDI YPCTLCGEVF QSPIHLEQHQ SIKHAISQLT DGDSGNNIVR  180
IIFQTGWADK SKNPVIHRIL KINNSKRVLT RFEDYRECVK QKASRNAVVR RDERCIADGN  240
ELLRFHCTTF LCELGQNGNS SICTQQYCSV CGIIKSGFSH KMDGISMQPT SWRGHVSVPE  300
DIEEEFGFMN VKRAMLVCRV IAGRIGCDPG YVDKEDSGFD SLMGRENGSH TRLDEEDELL  360
VFNSRAVLPC FVIVYTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350826.10.0PREDICTED: uncharacterized protein LOC102585494
TrEMBLA0A0V0HZJ00.0A0A0V0HZJ0_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000780310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.14e-97C2H2 family protein