PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00019.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 589aa    MW: 64449.9 Da    PI: 6.5675
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00019.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.3e-40328389263
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                              +e+a+kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Sme2.5_00019.1_g00022.1 328 PEQAIKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 389
                              6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542115.01E-4317185IPR020568Ribosomal protein S5 domain 2-type fold
CDDcd113691.27E-12320293No hitNo description
PfamPF011385.9E-2047180IPR001247Exoribonuclease, phosphorolytic domain 1
SuperFamilySSF556664.38E-20214305IPR015847Exoribonuclease, phosphorolytic domain 2
SuperFamilySSF542115.01E-43228242IPR020568Ribosomal protein S5 domain 2-type fold
ProDomPD0074788.0E-31329385IPR003851Zinc finger, Dof-type
PfamPF027011.7E-33330386IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.45332386IPR003851Zinc finger, Dof-type
PROSITE patternPS013610334370IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAASNGSSDL YSDMEVDAFR RLFPLRYHEQ HLLKAVRPDA RKLGSARDTT LALGAVASAD  60
GSALAKIGST TMLAAIKMEV MTPTVECPDE GSIAIEFHMP PICSPLVRPG RPAEAASVIS  120
KQLSDTLLSS RMIDLKELCL VGGKAAWMAY LDIYCLDADG SLFDAALLSA VAAFSHLNIP  180
VVSLNEDGRI VLVSEDNVQL KLEKQPVNTE KRKLKLNSQP FSLTCLLHKN YILADPTAEE  240
ESIMETTVTV VLDSSYQLVS LYKPGGPVLA HTSVIQDCVA LSRRRVKELQ NVLNEAISDM  300
EELSSQTLES ILVSTKPQQQ DQKKPKPPEQ AIKCPRCDSS NTKFCYYNNY SLSQPRYFCK  360
SCRRYWTKGG TLRNVPVGGG CRKNKRSSSS SRSSSSQDQH SIINTPSNPF SYDSSDLSLA  420
FARLQKQGNG QLGFENHNNI SMMCNDNPSG IFLDALRGGN GFLENSNPIN GLIHHQNLYY  480
GVGNIINGDM GLHNVENGGL GVNNSDQEMG LMHNYDQEIS SGVTTTSTTV TTVKQEMAKD  540
KGYDNKVLLG FPWQINGEGN NIADFDSTRR MWNGVGGSSW HGLLNSPLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6h25_C3e-55193017276Exosome complex component RRP43
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2942690.0DQ294269.1 Solanum tuberosum clone 142D11 3'-5'-exoribonuclease/RNA binding-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077338.10.0exosome complex component RRP43-like
RefseqXP_027773930.10.0exosome complex component RRP43-like
TrEMBLA0A1U8H2E90.0A0A1U8H2E9_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZDL90.0A0A2G2ZDL9_CAPAN; exosome complex component RRP43-like
TrEMBLA0A3Q7H3T30.0A0A3Q7H3T3_SOLLC; Uncharacterized protein
TrEMBLQ2PYX70.0Q2PYX7_SOLTU; 3'-5'-exoribonuclease/RNA binding-like protein
STRINGSolyc06g075390.2.10.0(Solanum lycopersicum)
STRINGPGSC0003DMT4000194170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.19e-42Dof family protein