PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00015.1_g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 399aa MW: 44147.1 Da PI: 4.5605 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 109.8 | 1.8e-34 | 111 | 212 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 klfqrlw++eDei lLqG++++++++g + ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgk+++f+ Sme2.5_00015.1_g00030.1 111 KLFQRLWTDEDEIELLQGFLEYTTQRGGinsssHHHHDTSAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKDFVFK 196 579***********************98776433445************************************************* PP DUF573 82 kehdqkifelskkiWg 97 ++hdq +f++s+k W Sme2.5_00015.1_g00030.1 197 SPHDQATFQISSKSWS 212 *************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.3E-32 | 113 | 212 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MASVEDQHAV VYNDDDLDDD EDDEAQNEVL VDEDDDVDVD DDEVDSTSSP PAPVPNHSGA 60 GEVTIAVAGV PASDPLCPEP KRQRINEFDV TPSAIVVAEE KKPLPLDDSR KLFQRLWTDE 120 DEIELLQGFL EYTTQRGGIN SSSHHHHDTS AFYDQIKNKL QLDFNKNQLV EKLRRLKKKY 180 RTVMSKMGSG KDFVFKSPHD QATFQISSKS WSNAGPIVVR SSSAAAPPPL AEDGGFDDED 240 SHLHLNNTNF VEHIPNFNPD GIDVKTSKSR KRPRGGAVNQ QYYQPPSCGG PNVILPPTPV 300 APQATASIPS LIEETVKSCL SPIFKELLTN LNGSRCLGLG MALGPTPLGF GSSAMSSDMK 360 VDEKWRKQQI LELEVYSKRL ELVQDQIKAQ LEELRSMTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015067113.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A0V0I5T2 | 0.0 | A0A0V0I5T2_SOLCH; Putative mediator-associated protein 1-like | ||||
STRING | Solyc02g083750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 4e-80 | DNA-binding storekeeper protein-related transcriptional regulator |