 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_00014.1_g00032.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NAC |
| Protein Properties |
Length: 256aa MW: 30009.8 Da PI: 6.7907 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00014.1_g00032.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161 | 4.5e-50 | 10 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrF P+deel+++yL +k+++++ l l + ++e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWk
Sme2.5_00014.1_g00032.1 10 LPPGFRFCPSDEELICHYLYNKIANEEgLVL-NYsLAEIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGFRANRATISGYWK 94
79**********************9995555.545***************88888999**************************** PP
NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
atgkd++vl+ +++ vg++ktLvfyk+rap+g kt+W+mhe+rle
Sme2.5_00014.1_g00032.1 95 ATGKDRTVLDPkTRNIVGMRKTLVFYKNRAPNGLKTNWIMHEFRLE 140
*********9856677***************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MDLREIGATL PPGFRFCPSD EELICHYLYN KIANEEGLVL NYSLAEIDLH TCEPWQLPEV 60
AKLNSTEWYF FSFRDRKYAT GFRANRATIS GYWKATGKDR TVLDPKTRNI VGMRKTLVFY 120
KNRAPNGLKT NWIMHEFRLE NPHMPLKEDW VLCRVYYKDK GENNNNNSTN KLSSQNKYEA 180
IIASSNLSQS PPRMNQNSLH CDISYQSQPH QIIQSSNTIH HHLFDLLVKD HHETTQLLDM 240
DFEESFLQDE GMHFYP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-46 | 9 | 158 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-46 | 9 | 158 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-46 | 9 | 158 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-46 | 9 | 158 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-46 | 9 | 158 | 19 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-46 | 9 | 158 | 16 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-46 | 9 | 158 | 16 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975445 | 2e-90 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
