PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00014.1_g00032.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 256aa MW: 30009.8 Da PI: 6.7907

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00014.1_g00032.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.5e-50	10	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF P+deel+++yL +k+++++ l l + ++e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWk Sme2.5_00014.1_g00032.1 10 LPPGFRFCPSDEELICHYLYNKIANEEgLVL-NYsLAEIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGFRANRATISGYWK 94 79********************9995555.545***********88888999************************ PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 atgkd++vl+ +++ vg++ktLvfyk+rap+g kt+W+mhe+rle Sme2.5_00014.1_g00032.1 95 ATGKDRTVLDPkTRNIVGMRKTLVFYKNRAPNGLKTNWIMHEFRLE 140 *****9856677*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-59	8	158	IPR003441	NAC domain
PROSITE profile	PS51005	56.776	10	158	IPR003441	NAC domain
Pfam	PF02365	3.6E-27	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDLREIGATL PPGFRFCPSD EELICHYLYN KIANEEGLVL NYSLAEIDLH TCEPWQLPEV 60 AKLNSTEWYF FSFRDRKYAT GFRANRATIS GYWKATGKDR TVLDPKTRNI VGMRKTLVFY 120 KNRAPNGLKT NWIMHEFRLE NPHMPLKEDW VLCRVYYKDK GENNNNNSTN KLSSQNKYEA 180 IIASSNLSQS PPRMNQNSLH CDISYQSQPH QIIQSSNTIH HHLFDLLVKD HHETTQLLDM 240 DFEESFLQDE GMHFYP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	9	158	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	9	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	9	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	9	158	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	9	158	19	168	NAC domain-containing protein 19
3swm_B	1e-46	9	158	19	168	NAC domain-containing protein 19
3swm_C	1e-46	9	158	19	168	NAC domain-containing protein 19
3swm_D	1e-46	9	158	19	168	NAC domain-containing protein 19
3swp_A	1e-46	9	158	19	168	NAC domain-containing protein 19
3swp_B	1e-46	9	158	19	168	NAC domain-containing protein 19
3swp_C	1e-46	9	158	19	168	NAC domain-containing protein 19
3swp_D	1e-46	9	158	19	168	NAC domain-containing protein 19
4dul_A	1e-46	9	158	16	165	NAC domain-containing protein 19
4dul_B	1e-46	9	158	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	2e-90	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015166501.1	1e-160	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	M1BSG2	1e-159	M1BSG2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400051915	1e-159	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-87	NAC domain containing protein 74