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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00007.1_g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YA | ||||||||
Protein Properties | Length: 1028aa MW: 114303 Da PI: 7.1708 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.3 | 1.8e-31 | 876 | 932 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF Sme2.5_00007.1_g00031.1 876 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 932 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14438 | 1.4E-25 | 55 | 138 | IPR025852 | Ataxin 2, SM domain |
Pfam | PF06741 | 1.0E-24 | 195 | 265 | IPR009604 | LsmAD domain |
SMART | SM01272 | 9.6E-37 | 195 | 266 | IPR009604 | LsmAD domain |
SMART | SM00521 | 1.4E-33 | 874 | 935 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.838 | 875 | 935 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.1E-26 | 877 | 932 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-21 | 878 | 900 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-21 | 909 | 932 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
MQQAVLPRSF ANGFGSRKGE KEMGTRLESR MQSTKTASSK STAVGKRGSY ESPSHDRLVY 60 FSTCLLGHQV EVQVVDGSVF SGIFHATSAD KDFGIILKMA RLIKDGSQGM KNTPESLIKP 120 PAKTLIIPGK ELVQVIAKEL LTDSCISQSR HGEIERQLER WVPDDDALEC PELDNIFDGH 180 WNRGWDQFQA NETLFGVKST FNEELYTTKL EKGPQMRELE KEALRIAREI ENEETRDLHL 240 AEERGIQLHG NVEVDEETRF SAVVRRVDDS GYGDCEDTLL DSCNDETFQC ISSSSMGQSF 300 TGKSVGEVVD AVEVSSRSSY VECDLVVNEV GTNRLVKTTV CQQIERAMEE IRHRNEDELQ 360 SSQLSTSRDG YQTYYDGHSQ QASTEYVPQS ASKMDESSPL GGTRSRSVNM MELVAMKRRQ 420 LAEGAHTSIP EGEFFLRFLN VDSKSSLRVE KQTLDKGVSS MDVSALSPLP ECQEKITGNF 480 SEKGPVASSK SRDNARSANS CVRPSSSALS SIDRAGASSS NGLSRSSSVS SLSSEKSTKS 540 TLNPHAKEFK FNPNAKSFVP SPTLRPASPI SDNSFYYPAG MAAMPHMHGM SMGIGVGPSF 600 AGHQSVVFNP QGTPAPQPYF HPSGPQYGQQ MMIGHPRQVV YMPTYPPKSC HLIFNGIRKP 660 VTVSKRRVMQ PLYLDCRLVM QYIRNHHTKE EESIDLFLLM CIRLVAQPFA DMGNKLLTVD 720 CMDQLSVQQM STFPGPQNSK EMNFHFQDQD SSSTQSTSQS CPEAANEGER KIHGKSNIHL 780 LAGSFRSSGM SDDSQSVSSQ EHGWTYDTYQ KNFAVEPFHY PDPYYHGLVA AYGNRTMCAL 840 PMPPVGSLPF SFLQVQSQML GTASPRVPLP LDLKQDEPIF VNAKQYQAIL RRRQYRARLE 900 AQNKLSKGRK PYLHESRHRH ALNRARGPGG RFVNMKKTRE SKSTDLINGQ DNQVPEELQL 960 NTKMLEHDVH QSGSYSRPAY SGITSSSNGH AIYHHQPFKY SALVCTGGAS EQDKEKKDNI 1020 SSPCLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 876 | 936 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015162224.1 | 0.0 | PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2 | ||||
TrEMBL | A0A3Q7FUC8 | 0.0 | A0A3Q7FUC8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g121950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3166 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 6e-39 | nuclear factor Y, subunit A3 |