PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00006.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 197aa MW: 22305.9 Da PI: 4.4186

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00006.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	70.8	2.1e-22	1	70	30	99
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +k++++v+m+s+++ llska e+fi elt+r+w++a++ kr+tlk+ d a a+ + f+fl divp + Sme2.5_00006.1_g00008.1 1 MKSNDQVQMVSTHSTLLLSKAIEMFIRELTVRAWMQADQVKRQTLKHDDFARAIRDEELFKFLSDIVPLQ 70 9******************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	7.2E-8	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.8E-19	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	6.81E-16	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKSNDQVQMV STHSTLLLSK AIEMFIRELT VRAWMQADQV KRQTLKHDDF ARAIRDEELF 60 KFLSDIVPLQ THKVGGEAND GQGNEAYQNF QPNDIPVEGN TDDGQDNEFH PAYQMVQLDN 120 IPVEKKAKYG QGNKFQSREF ILLSKALIEV FDVPAHQMVQ PNNIRASSIS IPGTPAPSSP 180 EAEFNIDEYL VDNEEDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	8e-14	1	68	51	118	HapE
4g92_C	8e-14	1	68	51	118	HapE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560807.1	1e-63	PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X10
TrEMBL	A0A1U8FNL4	3e-62	A0A1U8FNL4_CAPAN; nuclear transcription factor Y subunit C-3-like isoform X10
TrEMBL	A0A2G2XGQ3	4e-62	A0A2G2XGQ3_CAPBA; Nuclear transcription factor Y subunit C-2
STRING	XP_009594862.1	3e-53	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13918	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-18	nuclear factor Y, subunit C4