 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_00003.1_g00023.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 407aa MW: 45309.5 Da PI: 8.8976 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00003.1_g00023.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 372.5 | 7.7e-114 | 86 | 407 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
mdd+g+r+ r+k+ + ++++s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erd+++++
Sme2.5_00003.1_g00023.1 86 MDDTGNRDngRHKPpQGQHQPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDSAIAT 166
999999888899884444558888.....********************************************************* PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqq.lse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
l+++ens+ +g q+++g+k++++ q+ +++ p++++ +++ r+++++ea p++ a+e ++ +++k+ +++k + +
Sme2.5_00003.1_g00023.1 167 LQYRENSM-----SGGQIVRGVKHMHHPQHpQQHihhqPHMGEATYNPRDMHMVEAIPVSPPAPEPTKPRRNKRAKEPKAA---TG 244
******84.....45567777777777665433344579********************9988888777766655444433...33 PP
GAGA_bind 165 kkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrq 221
+kk+ k kkvk+e++d + sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr
Sme2.5_00003.1_g00023.1 245 SKKTPKA---SKKVKRETEDLNqttfaksqewkgaqemvgasddrnrqvavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRP 327
2222211...1222222222111233444568899*************************************************** PP
GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dls pvDLk+ WAkHGtn+++ti+
Sme2.5_00003.1_g00023.1 328 CYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSSPVDLKNNWAKHGTNRYITIK 407
*******************************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MGGIGVDRID RANDECLALS SQVQAVEATI DISIRLDCLY HTACGADILW TLCECGCYVD 60
WASLDKIERK GERLLISTLS SCIYRMDDTG NRDNGRHKPP QGQHQPSMKQ IMAIMAERDA 120
AIQERNLALS EKKAALAERD MAILQRDSAI AERNNAIMER DSAIATLQYR ENSMSGGQIV 180
RGVKHMHHPQ HPQQHIHHQP HMGEATYNPR DMHMVEAIPV SPPAPEPTKP RRNKRAKEPK 240
AATGSKKTPK ASKKVKRETE DLNQTTFAKS QEWKGAQEMV GASDDRNRQV AVSKPDWKDQ 300
DLGLNQVAFD ETTMPVPVCS CTGVLRPCYK WGNGGWQSSC CTTNLSMYPL PAVPNKRHAR 360
IGGRKMSGSA FTKLLSRLAA EGHDLSSPVD LKNNWAKHGT NRYITIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982314 | 0.0 | FJ982314.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
