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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00002.1_g00015.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 465aa MW: 50705.1 Da PI: 8.67 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00002.1_g00015.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C+++ rtG C++G++C+F+H+p
Sme2.5_00002.1_g00015.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
6899********************97 PP
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2 | zf-CCCH | 40.4 | 4.8e-13 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tGtCk+G++CkF+H++
Sme2.5_00002.1_g00015.1 125 GQPECQYYLKTGTCKFGATCKFHHPK 150
5799********************96 PP
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3 | zf-CCCH | 38.8 | 1.6e-12 | 172 | 196 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C +++rtG+Ck+G++CkF+H++
Sme2.5_00002.1_g00015.1 172 ESECAYYMRTGQCKFGSTCKFHHPQ 196
679********************97 PP
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4 | zf-CCCH | 37.8 | 3.2e-12 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
Sme2.5_00002.1_g00015.1 325 PGQPECQFYMKTGDCKFGAVCRFHHPR 351
5789*********************96 PP
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5 | zf-CCCH | 40 | 6.3e-13 | 371 | 397 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++lC f++r+G+Ck+G++CkF H++
Sme2.5_00002.1_g00015.1 371 PGEPLCIFYSRYGICKFGPSCKFDHPM 397
589**********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.295 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-6 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 126 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 127 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 175 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 326 | 351 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 328 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 370 | 398 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 370 | 397 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 372 | 397 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 373 | 397 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 375 | 395 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLYTR QQAYLGTAIQ LGSFSFVGDN GGSQSSLWRA IATARMKGEY 120 PERLGQPECQ YYLKTGTCKF GATCKFHHPK DKAGIAGRVT LNVLGYPLRP NESECAYYMR 180 TGQCKFGSTC KFHHPQPSNM MVSLRGSPVY PPVPSATTPG QLSYPLSRGS FIPGARWQGP 240 SGYTPLIVPQ GVVSVPGYAY SGQMGSVSPS ESQQQTAGNN QVYGASRSSD PATMGSQGVT 300 SPYRQASGPM GYYALQGENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERLIPPPDC 360 LLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMTVF TYSIASSSTT DAPTVQRLLG 420 SSSGTSALNM TSEGLAETVS TKPRRLSLSE TRKMPSGDNN IDREG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |