PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00002.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 465aa    MW: 50705.1 Da    PI: 8.67
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00002.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-114873227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C+++ rtG C++G++C+F+H+p
  Sme2.5_00002.1_g00015.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                             6899********************97 PP
2zf-CCCH40.44.8e-13125150227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++++tGtCk+G++CkF+H++
  Sme2.5_00002.1_g00015.1 125 GQPECQYYLKTGTCKFGATCKFHHPK 150
                              5799********************96 PP
3zf-CCCH38.81.6e-12172196327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C +++rtG+Ck+G++CkF+H++
  Sme2.5_00002.1_g00015.1 172 ESECAYYMRTGQCKFGSTCKFHHPQ 196
                              679********************97 PP
4zf-CCCH37.83.2e-12325351127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G+ C+F+H++
  Sme2.5_00002.1_g00015.1 325 PGQPECQFYMKTGDCKFGAVCRFHHPR 351
                              5789*********************96 PP
5zf-CCCH406.3e-13371397127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF H++
  Sme2.5_00002.1_g00015.1 371 PGEPLCIFYSRYGICKFGPSCKFDHPM 397
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2954674IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-54673IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394123151IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6123150IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10126150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6127152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943169197IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5169196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6170197IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10172196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4175195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596324352IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6324351IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8326351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5328354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5330354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037370398IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7370397IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10372397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5373397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4375395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLYTR QQAYLGTAIQ LGSFSFVGDN GGSQSSLWRA IATARMKGEY  120
PERLGQPECQ YYLKTGTCKF GATCKFHHPK DKAGIAGRVT LNVLGYPLRP NESECAYYMR  180
TGQCKFGSTC KFHHPQPSNM MVSLRGSPVY PPVPSATTPG QLSYPLSRGS FIPGARWQGP  240
SGYTPLIVPQ GVVSVPGYAY SGQMGSVSPS ESQQQTAGNN QVYGASRSSD PATMGSQGVT  300
SPYRQASGPM GYYALQGENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERLIPPPDC  360
LLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMTVF TYSIASSSTT DAPTVQRLLG  420
SSSGTSALNM TSEGLAETVS TKPRRLSLSE TRKMPSGDNN IDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353234.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM1BC390.0M1BC39_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000418440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-175zinc finger protein 1