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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00001.1_g00049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 635aa MW: 72410.3 Da PI: 6.5118 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355 | 1.2e-108 | 261 | 631 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++lL++cAea +s +++ ++L+++++++sp gd+++Rla +f++AL+ar a+ ++++t++ + ++ l+a++++ + Sme2.5_00001.1_g00049.1 261 TSLLTRCAEAAASYNTKTFIEVLKKIRQHSSPFGDATERLAYCFANALEARFAG------GDATVTTTKKISAADFLKAYQVYITA 340 689***************************************************......33344444456699************ PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 +P+ ++s++ aN+ I + ++++ rvHiiDf+i +G+QWp++++ + Rp+gpp+lRiTg++ p++g +e++eetg+rL++++++ Sme2.5_00001.1_g00049.1 341 CPFKRMSNIFANKSIAKLTSESPRVHIIDFGILYGFQWPCIIHGVSLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLEEYCKR 426 *****************************************************************9******************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFl 254 ++vpfe+++ +ak++++++le+L+++++E ++Vn+ ++l+++lde+v ++ +rd+vL+l+++++P+ +v+ a +n++ F Sme2.5_00001.1_g00049.1 427 FNVPFEYKA-IAKKWDEIKLEDLDINTDEIVVVNCLYRLKNVLDETVVTHGnrnPRDAVLNLIREINPHYFVHGIVSAMYNASFFT 511 *********.7**********************************9887655669******************************* PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW+ r + aGF+++pl+++++k++k+ Sme2.5_00001.1_g00049.1 512 TRFREALFHFSSQFDMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSVRNQIAGFRQLPLDQDIVKEVKTK 597 ************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++ + v+e+s+++++gWk+r ++++S+W+ Sme2.5_00001.1_g00049.1 598 VKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 631 *****888*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.464 | 234 | 611 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-106 | 261 | 631 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MNTSTHFPGD HRSSDGIEFC HRFSLNNNHI EGGVNDVVCF SSRRPSEEEI VVGSGNDRTV 60 VQGDYFDGVF KYIHQMLMDD QDDRPCMFQD CIALQAAERS FYEALNPPSV HCSTTDAVNQ 120 FVESTFNYDL DGVYSSGLNN YQQVTASGDD FIPPNANSCY QESDGNKKHT REENGDSSKG 180 RNSKQFASDG TEDDKTEEHY DKALLCPGLN PSFYENRSKS ATSWDNAAWD KQKSCHIKQS 240 KRGRPRGSKK GVKKNEVVDL TSLLTRCAEA AASYNTKTFI EVLKKIRQHS SPFGDATERL 300 AYCFANALEA RFAGGDATVT TTKKISAADF LKAYQVYITA CPFKRMSNIF ANKSIAKLTS 360 ESPRVHIIDF GILYGFQWPC IIHGVSLRPG GPPKLRITGI DFPQPGFRPA ERVEETGRRL 420 EEYCKRFNVP FEYKAIAKKW DEIKLEDLDI NTDEIVVVNC LYRLKNVLDE TVVTHGNRNP 480 RDAVLNLIRE INPHYFVHGI VSAMYNASFF TTRFREALFH FSSQFDMFEA TMPREDEGRM 540 MFEQEVFGRD IMNVIASEGA ERVERPESYK KWSVRNQIAG FRQLPLDQDI VKEVKTKVKM 600 FYHADFLVDE DSNWMLQGWK GRIMYALSVW EPLHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-45 | 260 | 630 | 5 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350886.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-162 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M1CZT4 | 0.0 | M1CZT4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078286 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-165 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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