PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G573100.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 644aa    MW: 68141.8 Da    PI: 6.9964
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G573100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.38.1e-133503887
            trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                        +++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Sevir.9G573100.4.p  3 LEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 50
                        6789****************************97..66667******985 PP
2trihelix108.44.7e-34350435187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  Sevir.9G573100.4.p 350 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 435
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-9251No hitNo description
SMARTSM007170.0031347409IPR001005SANT/Myb domain
CDDcd122034.14E-32349414No hitNo description
PROSITE profilePS500907.201349407IPR017877Myb-like domain
PfamPF138379.4E-24350436No hitNo description
Gene3DG3DSA:1.10.10.607.9E-4350406IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MKLEAMGYKR SAKKCREKFE NVDKYYKRTK DGRAGRGDGK AYRFFSELEA LHGASSSPAP  60
HPPPPSSLAP TPVAMAPPAT LLPVLQGSPG MAPAMHAEHQ PTRVAAVPQP APLMSGTTAP  120
AAVASDAACM MTPGDVSFSS GSDGEDTEDT GDGGKRKRQG GDVGGGGSGS GKMMRFFEGL  180
MRQVMERQEE MQQRFIEAIE RREQDRMIRE EAWRRQEVAR LAREQDALAQ ERAMAASRDA  240
AVVSFIQRVT GQTIPMPSVA PPVFISALTP PPLQPTPVAS AAPAAAPAQH QQPPSIHLSP  300
KPGKPQPQPH QTQPPPAQLQ MSSKEMIVRA PPAESQETPG SGGGAPSPSR WPKAEVHALI  360
QLRTELEARY QDSGPKGPLW EDISAGMRRM GYNRSAKRCK EKWENINKYF KKVKESNKKR  420
PEDSKTCPYY HQLEALYRSK ALASSAAPPP PADQQAAGVT VLAAVPLSQT PPHAEHGGKD  480
CSNGNGNGCA AGRGVSDNNG GSSGGMQTQA SNGGVAARFS VEGAGGNGVA TNKQPEGIIT  540
KETAATTEPR PQPVSMNDSY VNDTVDSDSS MDDDDDEDDF DDDDEGNVGG GNSKMQYEIQ  600
FQRQQQSQSS VVRPNASGGA GSGPGGPGPA ATASGSFLTM VHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G573100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578231e-118AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A368SX120.0A0A368SX12_SETIT; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-47Trihelix family protein