PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G573100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 755aa    MW: 79559.4 Da    PI: 6.5246
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G573100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.8e-3077161187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r+em+ ++r+++lk+plWe+vs+k+++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Sevir.9G573100.1.p  77 RWPRQETLALLKIRSEMDAAFREAALKGPLWEQVSRKLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 161
                         8********************************************************************97..66667******985 PP
2trihelix108.15.9e-34461546187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  Sevir.9G573100.1.p 461 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 546
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7670134IPR017877Myb-like domain
SMARTSM007170.006774136IPR001005SANT/Myb domain
CDDcd122031.85E-2776141No hitNo description
PfamPF138371.0E-2076162No hitNo description
SMARTSM007170.0031458520IPR001005SANT/Myb domain
CDDcd122032.91E-32460525No hitNo description
PROSITE profilePS500907.201460518IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-4461517IPR009057Homeodomain-like
PfamPF138371.2E-23461547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MQQPGMLPFS PAAGTPVGAA ATPAAAPSPI SSRPPEGQQQ QQQVDELAGG GGSFADHEGS  60
MSAGGDEGER GGPSGNRWPR QETLALLKIR SEMDAAFREA ALKGPLWEQV SRKLEAMGYK  120
RSAKKCREKF ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGASSSPA PHPPPPSSLA  180
PTPVAMAPPA TLLPVLQGSP GMAPAMHAEH QPTRVAAVPQ PAPLMSGTTA PAAVASDAAC  240
MMTPGDVSFS SGSDGEDTED TGDGGKRKRQ GGDVGGGGSG SGKMMRFFEG LMRQVMERQE  300
EMQQRFIEAI ERREQDRMIR EEAWRRQEVA RLAREQDALA QERAMAASRD AAVVSFIQRV  360
TGQTIPMPSV APPVFISALT PPPLQPTPVA SAAPAAAPAQ HQQPPSIHLS PKPGKPQPQP  420
HQTQPPPAQL QMSSKEMIVR APPAESQETP GSGGGAPSPS RWPKAEVHAL IQLRTELEAR  480
YQDSGPKGPL WEDISAGMRR MGYNRSAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY  540
YHQLEALYRS KALASSAAPP PPADQQAAGV TVLAAVPLSQ TPPHAEHGGK DCSNGNGNGC  600
AAGRGVSDNN GGSSGGMQTQ ASNGGVAARF SVEGAGGNGV ATNKQPEGII TKETAATTEP  660
RPQPVSMNDS YVNDTVDSDS SMDDDDDEDD FDDDDEGNVG GGNSKMQYEI QFQRQQQSQS  720
SVVRPNASGG AGSGPGGPGP AATASGSFLT MVHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G573100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516591e-123EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLK4A6780.0K4A678_SETIT; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-47Trihelix family protein