PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G566400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 302aa MW: 33124.3 Da PI: 9.8014 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.2 | 1.2e-31 | 31 | 135 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g Sevir.9G566400.1.p 31 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvG 121 89***************************955556888*************************************************6658 PP S.SEE..EEEEE-S CS B3 87 r.sefelvvkvfrk 99 + +++l++ ++r+ Sevir.9G566400.1.p 122 EaARGRLFIDWRRR 135 889999***99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-41 | 22 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-29 | 28 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.89E-26 | 29 | 116 | No hit | No description |
SMART | SM01019 | 3.0E-21 | 31 | 136 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.367 | 31 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-28 | 31 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEFTAGGLTR PGGGEERTTE QAAAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD 60 AAANEKGLLL SFEDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV 120 GEAARGRLFI DWRRRPDPPV QYHRLPLPSI PYAPWAAHAA VGARTTVLHL PPSPSSFYDY 180 DSHRRYAGYD AYGAGGRQLL FYRPHHQQHP QATMVLDSVP VRIPTTPSQH AEPPPPVASS 240 ASKRVRLFGV NLDCAAGPEE ESGGGRAAPP TQTTMPLQLP SPPSSSSSSS GKARCSLNLD 300 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-64 | 26 | 136 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-64 | 26 | 136 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G566400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727001 | 1e-165 | KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678485.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 1e-113 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A368SWM0 | 0.0 | A0A368SWM0_SETIT; Uncharacterized protein | ||||
STRING | Si036864m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-65 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G566400.1.p |
Publications ? help Back to Top | |||
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