PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G566400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 302aa    MW: 33124.3 Da    PI: 9.8014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G566400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3131135199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g
  Sevir.9G566400.1.p  31 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvG 121
                         89***************************955556888*************************************************6658 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  +++l++ ++r+
  Sevir.9G566400.1.p 122 EaARGRLFIDWRRR 135
                         889999***99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-4122139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2928135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-2629116No hitNo description
SMARTSM010193.0E-2131136IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36731136IPR003340B3 DNA binding domain
PfamPF023621.6E-2831135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEFTAGGLTR PGGGEERTTE QAAAVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD  60
AAANEKGLLL SFEDRTGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV  120
GEAARGRLFI DWRRRPDPPV QYHRLPLPSI PYAPWAAHAA VGARTTVLHL PPSPSSFYDY  180
DSHRRYAGYD AYGAGGRQLL FYRPHHQQHP QATMVLDSVP VRIPTTPSQH AEPPPPVASS  240
ASKRVRLFGV NLDCAAGPEE ESGGGRAAPP TQTTMPLQLP SPPSSSSSSS GKARCSLNLD  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-64261363114B3 domain-containing transcription factor NGA1
5os9_B3e-64261363114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G566400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270011e-165KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678485.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-113Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A368SWM00.0A0A368SWM0_SETIT; Uncharacterized protein
STRINGSi036864m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]