PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G564500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 314aa    MW: 34361.7 Da    PI: 6.0489
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G564500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072632962154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sevir.9G564500.1.p 263 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 296
                         469*****************************87 PP
2ELK25.43.3e-09217238122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK +L++++++++ ++++E++
  Sevir.9G564500.1.p 217 ELKIELKQGFKSRIEDVREEIL 238
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-165195IPR005540KNOX1
PfamPF037901.6E-145393IPR005540KNOX1
SMARTSM012561.7E-23106161IPR005541KNOX2
PfamPF037914.2E-18109160IPR005541KNOX2
PROSITE profilePS512139.132217237IPR005539ELK domain
PROSITE profilePS5007111.726237300IPR001356Homeobox domain
SMARTSM003891.9E-10239304IPR001356Homeobox domain
SuperFamilySSF466894.71E-16239303IPR009057Homeodomain-like
CDDcd000863.76E-12240301No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25244303IPR009057Homeodomain-like
PfamPF059201.1E-17257296IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQGGGGGDQG GGMDMAVGFG GGAECSSSSA TAAAAAAAAA AAAAAEAEER QLLKGEIAVH  60
PLCEQLVAAH VGCLRVATPI DHLPLIDAQL AQSSGLLHSY AAHHRPFLSP HDKHDLDSFL  120
AQYLMLLCSF REQLQQHVRV HAVEAVMACR EIEQSLQDLT GATLEEGSGA TMSEDEDEPP  180
MLEGPLDMGS DGHDVMGFGP LLPTDSERSL MERVRQELKI ELKQGFKSRI EDVREEILRK  240
RRAGKLPGDT TSILKQWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN  300
NSQTSTLKSK RKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293312RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G564500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0693360.0BT069336.2 Zea mays full-length cDNA clone ZM_BFc0110H11 mRNA, complete cds.
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985913.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLK4ACX00.0K4ACX0_SETIT; Uncharacterized protein
STRINGSi036727m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-149KNOTTED-like homeobox of Arabidopsis thaliana 7