PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G544300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 572aa    MW: 61130.8 Da    PI: 8.6368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G544300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05460485123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++C+  +C ++F++k +L +H ++ +
  Sevir.9G544300.1.p 460 FECNidYCQMTFKTKTELSVHKKNmC 485
                         89*******************99866 PP
2zf-C2H211.30.0011543567123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ykC+   C+k ++  s+++rH r++
  Sevir.9G544300.1.p 543 YKCTtpGCNKIYKFVSDFTRHRRRC 567
                         99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516460482IPR015880Zinc finger, C2H2-like
SMARTSM003550.83483507IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385483512IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4484507IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280485507IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-14494549No hitNo description
Gene3DG3DSA:3.30.160.601.3E-10508533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.801513542IPR007087Zinc finger, C2H2
SMARTSM003550.0012513537IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280515537IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-8534565IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530543565IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MRIRRYAARL LSSSSTGGAT TAAPSSPPPP PAASWLHAAA DDCCAFCDLN RSGPQEGPDA  60
IKHKGHIAGW VPESDVRGDG RVRQAQHLTS PEVKKCKTDH GRNVNKTSVG LRAPRGTSGV  120
SEAGAEPAVK PGPLVVNDAA IGQEVKCKFS LTSDAAKPEV TGGDSLVNGS TTELDVLKDA  180
PFANEAVHDP DVTDKVSTET KAATVTSIAP EVAGMPSRKA VTDPGVTVTM LRTGSLSTEG  240
ADGPEVTGAA SIMHETTKLE SAGEDYIASK PAAEPEDSGR ASSNVDATAA LDKSQLHSCN  300
PNIGNVQLGN AGETVASAVQ PSGCDAAKVG SSVNSTSNGP VGAKGPTVEG GMPNDRSVTP  360
RVSYVFDIVA RSIGTSGRTD IICYARRRGK RKLELLKVKM ENIELEDGVV CEEGTLERTG  420
RCESVLSNAG SVDVKLADIK KELMDDSAAS KVKKTKKNRF ECNIDYCQMT FKTKTELSVH  480
KKNMCTVKSC SRQFRSHRYL RRHQSVHNDD MPYKCPWDGC GMAFKWSWDR TEHFKVHAGV  540
KPYKCTTPGC NKIYKFVSDF TRHRRRCKPQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-4046056623129Lysine-specific demethylase REF6
6a58_A2e-4046056623129Lysine-specific demethylase REF6
6a59_A2e-4046056623129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385391RRRGKRK
2385392RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G544300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985697.10.0zinc finger protein GLI1 isoform X2
TrEMBLK4A7Q50.0K4A7Q5_SETIT; Uncharacterized protein
STRINGSi034911m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.16e-41relative of early flowering 6