PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G508700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 509aa    MW: 52822.8 Da    PI: 8.5991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G508700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-052850123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Sevir.9G508700.2.p 28 FVCEICNKGFQRDQNLQLHRRGH 50
                        89*******************88 PP
2zf-C2H213.90.00016104126123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Sevir.9G508700.2.p 104 WKCDKCSKKYAVQSDWKAHVKTC 126
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-52750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-72750No hitNo description
PfamPF121718.1E-52850IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9492850IPR007087Zinc finger, C2H2
SMARTSM003550.0172850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003552106999IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-492125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-799124No hitNo description
SMARTSM0035590104124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGGGGGGADP DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS  60
GKEARKRVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK  120
AHVKTCGSRE YRCDCGTLFS RRDSFITHRA FCDALAEESA KARAEAPPAE ENGGSAAVGP  180
PPAPPLTQAP VPAAPVPLRQ QPPPPPPAPA PPHRPVQRNE PETNTPEPVQ FAPPQAAVPV  240
LSQTSAAAAN VSASSSSSVA GTSQSLIGGM FAPSSMAPAP QFADLGGGVS RPERALPAKP  300
PSLCLATDAS SSIFSAPAAA DRQQFAPPPP PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR  360
CLGLDVSSSP GASSSGQQHH HEAMQASLPD TSMQQWPQRM EPEPSPMLSP GLGLGLPYDS  420
SGAPVCLPDL MMGQSSLFSG KPATLDFLGL GMSPTGASAS RGFSAFIQPI GGAVGMAGIG  480
AGAVETFVAG RGPQATPCER NSSTSPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35100161364Zinc finger protein JACKDAW
5b3h_F4e-35100161364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G508700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985335.10.0protein indeterminate-domain 1
SwissprotQ9LVQ71e-136IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLK4A8770.0K4A877_SETIT; Uncharacterized protein
STRINGSi035083m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-89indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]