PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G508700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 538aa MW: 55815.3 Da PI: 8.8038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sevir.9G508700.1.p 57 FVCEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Sevir.9G508700.1.p 133 WKCDKCSKKYAVQSDWKAHVKTC 155 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 56 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.76E-7 | 56 | 79 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 98 | 128 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 121 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.76E-7 | 128 | 153 | No hit | No description |
SMART | SM00355 | 90 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MEAEATPTTA VSSSGGAAPV PPPGPPAKKK RALPGMPDPD AEVIALSPKT LLATNRFVCE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEARKRVYVC PEPSCVHHDP SRALGDLTGI 120 KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HVKTCGSREY RCDCGTLFSR RDSFITHRAF 180 CDALAEESAK ARAEAPPAEE NGGSAAVGPP PAPPLTQAPV PAAPVPLRQQ PPPPPPAPAP 240 PHRPVQRNEP ETNTPEPVQF APPQAAVPVL SQTSAAAANV SASSSSSVAG TSQSLIGGMF 300 APSSMAPAPQ FADLGGGVSR PERALPAKPP SLCLATDASS SIFSAPAAAD RQQFAPPPPP 360 SPSPHMSATA LLQKAAQMGA TSSSSSFLRC LGLDVSSSPG ASSSGQQHHH EAMQASLPDT 420 SMQQWPQRME PEPSPMLSPG LGLGLPYDSS GAPVCLPDLM MGQSSLFSGK PATLDFLGLG 480 MSPTGASASR GFSAFIQPIG GAVGMAGIGA GAVETFVAGR GPQATPCERN SSTSPIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 129 | 190 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 129 | 190 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G508700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054502 | 0.0 | BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds. | |||
GenBank | BT054618 | 0.0 | BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds. | |||
GenBank | EU955578 | 0.0 | EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985335.1 | 0.0 | protein indeterminate-domain 1 | ||||
Swissprot | Q9LVQ7 | 1e-144 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | K4A877 | 0.0 | K4A877_SETIT; Uncharacterized protein | ||||
STRING | Si035083m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-95 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G508700.1.p |
Publications ? help Back to Top | |||
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