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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.9G486500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
AP2 |
Protein Properties |
Length: 622aa MW: 66958.3 Da PI: 6.8179 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.9G486500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 46.2 | 1.2e-14 | 279 | 339 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV ++++++gr++A+++d + +g ++ ++++lg ++t+++Aa+a++ a++k++g
Sevir.9G486500.1.p 279 SRYRGVtSRHRWTGRYEAHLWDnSCRkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 339
79*****9**************766577788446**********99*************98 PP
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2 | AP2 | 46.5 | 8.9e-15 | 382 | 433 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW ++I + +k +lg+f t eeAa+a++ a+ k++g
Sevir.9G486500.1.p 382 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 433
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 622 aa
Download sequence Send
to blast |
MGEMASGGSN WLGFSLSPHT ALEVPSASEP APAHQAPPPS STTISSSSNN AAATSNFLFS 60 SMATPYPGYY CVGGAYGDGT SSAGVYYSHL PALPIRSDGS LCNMEGTMPS SPPKLEDFLG 120 GGNGGGQETA TYYSHQQGQE EVASRDYHQY QHHQLVPYTF QPLTEAEMLQ EESAPMDEAM 180 AAAKNYLLTS YGACYSNGEM HPLSLSMMSP GSQSSSCVSA APQQQQMVAV AAAASAAAAQ 240 GHSNGGGEQC VGRKRGTGKG GTKQPVHRKS IDTFGQRTSR YRGVTSRHRW TGRYEAHLWD 300 NSCRKDGQTR KGRQVYLGGY DTEDKAARAY DLAALKYWGP ATHINFPVEN YQGELEEMKN 360 MTRQEFVAHL RRRSSGFSRG ASIYRGVTRH HQQGRWQSRI GRVAGNKDLY LGTFTTQEEA 420 AEAYDIAAIK FRGLNAVTNF DITRYDVDKI LESSTLLPVE EARKVKVIEA ANGVPVIQLG 480 GRELNPTEEP SANCRMVLHG SSQEAVHCPE AVDHQKGMMS DSNSSLHGIV GLDVECVAHD 540 HHLDVQGKSG GVNFSNSSSL VTSLGNSREG SPERLGLAML YGKQQQNAVS LASMSPWMPM 600 PAPTAQHVVS HLPFFAAWAD A*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Publications
? help Back to Top |
- Kitomi Y, et al.
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] - Li P,Xue H
Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] - Horstman A,Willemsen V,Boutilier K,Heidstra R
AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. Trends Plant Sci., 2014. 19(3): p. 146-57 [PMID:24280109] - Li C, et al.
Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis. PLoS ONE, 2014. 9(4): p. e94830 [PMID:24756087] - Wynn AN,Seaman AA,Jones AL,Franks RG
Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] - Randall RS, et al.
AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins. Biol Open, 2015. 4(10): p. 1229-36 [PMID:26340943] - Meng LS,Wang ZB,Yao SQ,Liu A
The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis. J. Cell. Sci., 2015. 128(21): p. 3922-32 [PMID:26395398] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Han H,Krizek BA
AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels. Plant Mol. Biol., 2016. 92(4-5): p. 597-612 [PMID:27605095] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018. [PMID:28808105] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]
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