PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G479800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 443aa    MW: 46398.6 Da    PI: 9.3751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G479800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.5e-0783105123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++Cg+ F r  nL+ H r+H
  Sevir.9G479800.1.p  83 YVCEICGQGFQREQNLQMHRRRH 105
                         9*********************9 PP
2zf-C2H210.70.0016181203123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  C k +  +s++k H++t+
  Sevir.9G479800.1.p 181 WVCARCAKGYAVQSDYKAHLKTC 203
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.63E-782105No hitNo description
Gene3DG3DSA:3.30.160.601.4E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.75983105IPR007087Zinc finger, C2H2
SMARTSM003556.5E-483105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355110145175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.63E-7176201No hitNo description
SMARTSM00355270181208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MALLVKSHHQ MLGSSSTSSS SPSASRQPAA AAVAPPPPPP SSSCLTDQQP SPAKRKRRPP  60
GTPDPDAEVV ALSPRTLLES DRYVCEICGQ GFQREQNLQM HRRRHKVPWR LVKRAPPGGG  120
EDSGAGAGGG NGTTGAATTP RKRVFVCPEP SCLHHDPAHA LGDLVGIKKH FRRKHGGRRQ  180
WVCARCAKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN SGRMRGEVVP  240
VPSTLPVIRP AVPRHPPAVA PPPELQLLPA STAAPLTAAT TASLSTVTTT TTSSAHEQPH  300
VATTTKLQLS IGPVITAACS NGAVAAAAIG EEEDAEELRR AVEEKAAADA ARERAREEAA  360
AAERALEEAR RARQRARADL EKACALRDHA ARLLAQVTCH ACRQRSLVAM SLAVVAGEGH  420
GHGGPAVACD PMRGGGVGAA GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17177231357Zinc finger protein JACKDAW
5b3h_F7e-17177231357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G479800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3761500.0AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698004.10.0LOW QUALITY PROTEIN: protein indeterminate-domain 16
SwissprotF4IPE31e-109IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A3L6SAP50.0A0A3L6SAP5_PANMI; Protein indeterminate-domain 16
STRINGSi035635m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.12e-87C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]