PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G469100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 492aa    MW: 55272.1 Da    PI: 8.9761
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G469100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1896.6e-2869159188
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++  +   +++++++ra tr+gCka++++kk   gkw+vtk++++HnH 
  Sevir.9G469100.3.p  69 DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDglhSDQKQQERAGTRVGCKAMIMIKKFGPGKWMVTKFVKNHNHG 159
                         6*******************************************99999999**************************************5 PP
2FAR190.52.3e-28207299290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re ++kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+
  Sevir.9G469100.3.p 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvvtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHS 297
                         9********************************************99998899999**********************************9 PP

                FAR1  89 la 90 
                         l+
  Sevir.9G469100.3.p 298 LS 299
                         96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2569159IPR004330FAR1 DNA binding domain
PfamPF031012.6E-26207299IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVVMEGTVIR IASESKPGNE LDSLTELPRS METLVAHHHE VEKLIGLEDD TELTPCEGME  60
FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLHSD  120
QKQQERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSGP ANQNGDPMEK  180
PHSIEMGPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRT KKVVTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY  300
SKMVPITSNN TSGEVADFTA KSADPNDVKN EGCSAGTQCN PADSLTVLYN NLCQEALKFA  360
EEGSVTEEIY HVAVSALKEA AKKVAEVKRS RPALPNRDLI SESKHDVFQV QTMSTLQCST  420
QVELKTTLSR RPLQESASNL LLVPTNIITD SRLYNRVDNV PLSSDFLKNG KYAMGDKVGM  480
QQKVLLCILR T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G469100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546300.0EU954630.1 Zea mays clone 1474335 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698434.10.0uncharacterized protein LOC101766516
TrEMBLA0A368ST180.0A0A368ST18_SETIT; Uncharacterized protein
STRINGSi034492m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-23FAR1-related sequence 5