PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G443300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 209aa    MW: 22951.2 Da    PI: 11.6589
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G443300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.41.9e-0817101286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++ e+ +Li+a    + r   + l  ++W++ ++++      + r f+r+  qC+ + + l+kryk++  ++        s++p+++ql+
  Sevir.9G443300.1.p  17 WSDGETSTLIDAWGPAHLRRHPRHLLLNDWRAAASAVnahraaAGRRFNRTRLQCQTRVRTLKKRYKEELSRQPP------SRWPHLRQLH 101
                         ****************************************9999999********************98777664......4688888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1616101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPSCGRKPPP ERASGNWSDG ETSTLIDAWG PAHLRRHPRH LLLNDWRAAA SAVNAHRAAA  60
GRRFNRTRLQ CQTRVRTLKK RYKEELSRQP PSRWPHLRQL HPFLASADGP PPGFPAATRA  120
PAPAVKQEVG GSVGLAASWT VPRRPRNGAA RSSSSGFCPG AVVTKLAEVY ERVEMARIGA  180
GNLKMEMEAQ RAMLDAVKVE QQWKMENA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G443300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704591.11e-139trihelix transcription factor ASIL1
TrEMBLK4AF271e-138K4AF27_SETIT; Uncharacterized protein
STRINGSi037484m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-07sequence-specific DNA binding transcription factors