PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G395000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 362aa    MW: 39845.6 Da    PI: 8.931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G395000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.84e-31311761127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 
                         lppG++F Ptd elv +yL++++++++l+l  ++ + +i++++P +L +k+++ +e++w+fF+kr++k++ g+r+nrat  +g W+atg+ 
  Sevir.9G395000.1.p  31 LPPGYHFLPTDAELVLHYLRPRLTNHQLPL-PTFFDERILHYHPDRLIEKYREyGEDRWFFFTKRERKHEGGSRPNRATPdNGHWNATGSP 120
                         79**************************99.5577789*********8544443778********************87659********* PP

                 NAM  90 kevlskkgelvglkktLvfy...................kgrapkgektdWvmheyr 127
                         +++ s +++lvg  +tLvfy                   k +a kg+kt+W+m ey+
  Sevir.9G395000.1.p 121 RRIRS-GRALVGRVRTLVFYeaprrkkttheeagpppvgKDKADKGVKTEWTMYEYE 176
                         *****.999***********8888877777776666666689**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3826206IPR003441NAC domain
PROSITE profilePS5100537.15131206IPR003441NAC domain
PfamPF023651.8E-1832176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEDDTPAAAA GAASASTAAA CSGPGRFVVN LPPGYHFLPT DAELVLHYLR PRLTNHQLPL  60
PTFFDERILH YHPDRLIEKY REYGEDRWFF FTKRERKHEG GSRPNRATPD NGHWNATGSP  120
RRIRSGRALV GRVRTLVFYE APRRKKTTHE EAGPPPVGKD KADKGVKTEW TMYEYESLAS  180
EEEFVATCAD GNAKMDVIVL CTIQKKKQKT KHGEESKEKI TRTKRKTREK SQDAEQGGCA  240
GGKKARKKRM RAEEAQKEDI TLSETEAPGQ ELAVEAYTGV ASFTVDPNAD TSHCFFSNTS  300
SPVSTPPQET MMAAAARGDN NHISVHPSNA AMGKLCLRSD SASASRGTVH STLDLPAAYV  360
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-252920913171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G395000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432496e-54AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467804.12e-78NAC domain-containing protein 67
TrEMBLA0A368SQF70.0A0A368SQF7_SETIT; Uncharacterized protein
STRINGSi039216m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-33NAC-like, activated by AP3/PI