 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sevir.9G394300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GeBP |
| Protein Properties |
Length: 288aa MW: 31813 Da PI: 9.0604 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.9G394300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 104.1 | 1.2e-32 | 18 | 117 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q i
Sevir.9G394300.1.p 18 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAI 108
79*************************8867778***************************************88899************* PP
DUF573 89 felskkiWg 97
fe+++ iW+
Sevir.9G394300.1.p 109 FEIARTIWR 117
********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MFPTVDDPSA AGAMRRPLFQ RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM 60
RRRLHTGFTK NQLVEKIRRL KRKYRNCVER LRVAGAGFTF RSPHEQAIFE IARTIWRPDS 120
DKHGRDSDDE GGASGANAHD GPLAIIDAVA PNGESTKSPT SRPRRGRRRR TGDFPADAAA 180
ETLALPQAPM PVMAEDALPT AENPILAALF KEMVRAMLSI GGGGGAAPMG LEPPPAIAGL 240
PMEGEKWRQQ RIRELEVYLR RIDLLQDQAR AALEELRSAP HAGGMNS*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT087680 | 1e-159 | BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds. |
| GenBank | EU954230 | 1e-159 | EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds. |
| GenBank | JX428520 | 1e-159 | JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G28040.1 | 2e-41 | DNA-binding storekeeper protein-related transcriptional regulator |
