PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 321aa MW: 34053.4 Da PI: 7.8243

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G389300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W+++++ g+ R+ k+c++rw +yl Sevir.9G389300.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPASTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	45.2	2.2e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eEd l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sevir.9G389300.1.p 67 RGGFSGEEDRLIAHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112 678999**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.885	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-22	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-15	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.507	66	116	IPR017930	Myb domain
Pfam	PF00249	1.4E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.29E-11	70	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PASTGLMRCS KSCRLRWTNY 60 LRPGIRRGGF SGEEDRLIAH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLLLLQ 120 QQQKMQQRAS AALSTPPPPP HKGQWELKLQ TDIDLARRAL RDALSCSPPA PAPGTTTTSG 180 HGGTGPAPPP LIAEPAAALA QAYALTARDV PGVLDGWSPR AGKNGRSGPA TPPPPVAAES 240 ASGSTSELTE CSASASSASD KRAAPVAGQL FAREEEKAAA DGEVPPLSEI ESWLLEDGGG 300 EQKPVLDGLL LDAALRNFGF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G389300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962848	1e-150	EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984215.1	0.0	myb-related protein 306
Swissprot	P81392	2e-88	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A368SQ64	0.0	A0A368SQ64_SETIT; Uncharacterized protein
STRING	Si038845m	1e-172	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	5e-79	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Sevir.9G389300.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]