PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G377000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 204aa MW: 21865.2 Da PI: 7.4984 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.6 | 1.2e-08 | 10 | 56 | 17 | 59 |
T-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 17 gsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 g+ +r YYr t++ +Cp++k+v+++ ++dp + +tY +eH ++ Sevir.9G377000.1.p 10 GAAATRYYYRRTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHLCN 56 67889********99999*******8752679************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 2.8E-11 | 9 | 55 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-7 | 9 | 57 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-8 | 10 | 56 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-7 | 10 | 56 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLQSGRGKNG AAATRYYYRR TYKDNMNCPA TKQVQQKDHS DPPLYAVTYY NEHLCNSAFL 60 TLSPSEFQLQ TSSGKAISVF FDSSSGPAAQ EPLSTAAAPT NASSGSPSSS AAAQRGTPPE 120 ISNPHVMRRS ETYPWGTGAV EQKPASCSTK FHDAFTASAG VVPSGGRCRQ IWVHQVIGEG 180 SDPPHVCGVT EMFLASEQFY EKD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G377000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058622 | 1e-149 | KU058622.1 UNVERIFIED: Panicum miliaceum WRKY5-like gene, complete sequence. | |||
GenBank | KU058623 | 1e-149 | KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792602.1 | 3e-75 | probable WRKY transcription factor 35 | ||||
TrEMBL | A0A3L6TES9 | 4e-76 | A0A3L6TES9_PANMI; Putative WRKY transcription factor 35 | ||||
STRING | Pavir.Ib01500.1.p | 2e-70 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G377000.1.p |