PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G362600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 24349 Da PI: 10.0376 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.4e-18 | 113 | 204 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k+ ++++ + l+lp +f++eh +e +k +tl de+ +++v++ ++++y +t W++F+ +++L++gD +vF+l+++++f Sevir.9G362600.1.p 113 LKTV-SKYYATAFSLSLPPHFCREHL--PEHGKVITLVDEEDDEFDVQYYKGPNDRGYCIT-SWRGFATDHKLDDGDCLVFQLIQQRKF-- 197 4444.777788888***********5..346779***************667777779999.9*********************97777.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v ++r+ Sevir.9G362600.1.p 198 KVYIIRA 204 8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 106 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-22 | 107 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.66E-23 | 110 | 203 | No hit | No description |
PROSITE profile | PS50863 | 11.406 | 111 | 205 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-15 | 112 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 113 | 204 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MADAARYEVQ RRRQIEENKR RIEELGLRHL AAAAMPPKAK QLKLKHKARA PGAAAPPRRS 60 GRVANLPDQP DYRENVKKKI VIGPTAAERS YAIAKAKAKE LEGELRADYP TFLKTVSKYY 120 ATAFSLSLPP HFCREHLPEH GKVITLVDEE DDEFDVQYYK GPNDRGYCIT SWRGFATDHK 180 LDDGDCLVFQ LIQQRKFKVY IIRARSYLKM MS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G362600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698151.1 | 1e-157 | B3 domain-containing protein Os06g0194400 | ||||
Refseq | XP_022679065.1 | 1e-157 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-60 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A368SP69 | 1e-155 | A0A368SP69_SETIT; Uncharacterized protein | ||||
STRING | Si039359m | 1e-108 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37390 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G362600.1.p |
Publications ? help Back to Top | |||
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