PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G346500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 276aa    MW: 29449.5 Da    PI: 10.2518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G346500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.9e-3030133193
                         EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                         f+kv tpsdv+k++rlv+pk++ae++             g   ++  l++ed+sg+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+
  Sevir.9G346500.1.p  30 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaaaAGTGGKGLVLSFEDRSGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDT 120
                         99***************************999999888334446789******************************************** PP

                         EEEEE-SSSEE..E CS
                  B3  80 vvFkldgrsefelv 93 
                         v+F++    ++ ++
  Sevir.9G346500.1.p 121 VLFSRG-AGQGPPR 133
                         ****43.2344333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-4025137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-3027126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-2628125No hitNo description
PROSITE profilePS5086313.74730144IPR003340B3 DNA binding domain
SMARTSM010191.7E-2230144IPR003340B3 DNA binding domain
PfamPF023629.3E-2830134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEFAPAHGGV EDSERARGAG AAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD  60
ASAAAAAAGT GGKGLVLSFE DRSGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT  120
VLFSRGAGQG PPRARLFIDF RRRRQDLAFL QPPLASAQRF LPLPSVPICP WQDYGAYGAS  180
AAPVPSSRHV LFLRPQVPAA MVLASVPVSV AASTVEATRS KRVRLFGVNL DCPPDGEDGA  240
GVTRAASTLL QLPSPSSSTS SSTAGKDACS LDLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-53251433113B3 domain-containing transcription factor NGA1
5os9_B9e-53251433113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G346500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983810.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-101Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLK4AM370.0K4AM37_SETIT; Uncharacterized protein
STRINGSi039972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-46B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]