PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G346500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 276aa MW: 29449.5 Da PI: 10.2518 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.8 | 2.9e-30 | 30 | 133 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kv tpsdv+k++rlv+pk++ae++ g ++ l++ed+sg+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+ Sevir.9G346500.1.p 30 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaaaAGTGGKGLVLSFEDRSGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDT 120 99***************************999999888334446789******************************************** PP EEEEE-SSSEE..E CS B3 80 vvFkldgrsefelv 93 v+F++ ++ ++ Sevir.9G346500.1.p 121 VLFSRG-AGQGPPR 133 ****43.2344333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-40 | 25 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.01E-30 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-26 | 28 | 125 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 30 | 144 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-22 | 30 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-28 | 30 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEFAPAHGGV EDSERARGAG AAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD 60 ASAAAAAAGT GGKGLVLSFE DRSGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT 120 VLFSRGAGQG PPRARLFIDF RRRRQDLAFL QPPLASAQRF LPLPSVPICP WQDYGAYGAS 180 AAPVPSSRHV LFLRPQVPAA MVLASVPVSV AASTVEATRS KRVRLFGVNL DCPPDGEDGA 240 GVTRAASTLL QLPSPSSSTS SSTAGKDACS LDLGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-53 | 25 | 143 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-53 | 25 | 143 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G346500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983810.1 | 0.0 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 1e-101 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | K4AM37 | 0.0 | K4AM37_SETIT; Uncharacterized protein | ||||
STRING | Si039972m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 1e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G346500.1.p |
Publications ? help Back to Top | |||
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