PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G329000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 29766 Da PI: 4.5844 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6.1e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Sevir.9G329000.1.p 92 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 141 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 19 | No hit | No description |
Pfam | PF00847 | 2.6E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 92 | 150 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-36 | 92 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-32 | 92 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 92 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.05E-30 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAKELQETSS SSATTTSSCT TSCCSSTVTD SSSSPPSPAA ANAAPAPRKR QAAEPEADAE 60 VGGEEEEEEE FAGKATAAKK KRKRSSEGKH PTYRGVRMRA WGKWVSEIRE PRKKSRIWLG 120 TFPTAEMAAR AHDVAALAIK GRAAHLNFPD LAEVLPRAAS AAPKDVQAAA ALAAAFESPS 180 SPSSEPGAGA TEPCHAQDEP ATKNAAAPGE AAADEAAVPP PASQSQPATP SSGVEEERQL 240 FDLPDLLLDI RDGFGCFPPM WAPLPDVEEV NAELRLEEPL LWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-18 | 90 | 149 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | KKRKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G329000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF314703 | 0.0 | KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274158.1 | 0.0 | uncharacterized protein LOC101781338 | ||||
Swissprot | Q8LBQ7 | 3e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | K4AKK4 | 0.0 | K4AKK4_SETIT; Uncharacterized protein | ||||
STRING | Si039427m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 3e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G329000.1.p |
Publications ? help Back to Top | |||
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