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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G326300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29241 Da PI: 7.2669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.8e-18 | 100 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+++ta eAa+a+++a+ l+g Sevir.9G326300.1.p 100 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFHLRG 150 7********.**********8...4445***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.355 | 100 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.24E-28 | 100 | 159 | No hit | No description |
Pfam | PF00847 | 7.7E-13 | 100 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-23 | 100 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-36 | 100 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-32 | 100 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MALLHEHLDI IRAHLLDDPH DAAAAASSED YSASSPSPSP PAAGRRPLPA LSIALPPRTA 60 AVALQQQQLW APPPPPPQII HHQQQEQHCF PGPEEDDFRR YRGVRQRPWG KYAAEIRDPA 120 RKGARVWLGT YDTAVEAARA YDRAAFHLRG SKAILNFPNE VAFGTAARWG PPAAAPRPSA 180 ATAGSNKRAR SPEPALREQD AGCMVREVKK ERVQEPAASC GWDGAVVMAP AAASGGAADF 240 FWEEEELLKG TICSLPPLSP YPQLVHASIC A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 101 | 164 | 6 | 69 | ATERF1 |
3gcc_A | 2e-27 | 101 | 164 | 6 | 69 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G326300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU977088 | 7e-93 | EU977088.1 Zea mays clone 998737 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983639.1 | 1e-139 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A368SMX7 | 1e-138 | A0A368SMX7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib02259.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G326300.1.p |