PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G324200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 484aa    MW: 51701.4 Da    PI: 11.7321
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G324200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.53.1e-22224313186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l
  Sevir.9G324200.1.p 224 CWTEEETLALIEAYRDRWEALRKGNLRAADWDRVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLL 312
                         8*************************************998888788899*************************98443..47****988 PP

            trihelix  86 e 86 
                         +
  Sevir.9G324200.1.p 313 H 313
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-22223314No hitNo description
PROSITE profilePS500906.098225287IPR017877Myb-like domain
SMARTSM005951.1E-5232316IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKKRRGARPR GPTTGTQAPS VRPSCPSHAG TARAWARPPP RQRIIKRRSG SPDPSAWPLH  60
RHADRTASGL RFQRGGKNQG EGGRSRGKRP PRRGRHSPPT QPPIPSQHGT RPRRAAAEAG  120
APVPSRPPFL PGFLPSRPHP SAARRESTRQ TPQNHRTAPP AHAAAAVGDD AALPSRDDVV  180
SSPDLPPLAA PVAAAAAAAA AAASSGGGIG LGGGASGRRL PPPCWTEEET LALIEAYRDR  240
WEALRKGNLR AADWDRVANA VTARCGRFPT ATPKSGVQCR HKIEKLRKRY RAERSRSAGR  300
SKGPKWPFFP LLHDLAGGGV PDPSPNAIVK IKTKGPAPLA STPSPVSSPS SEEGVRSRSL  360
HGLISNGGAG SGLRFTIPKA SRSKPAGVAA VKPERNGGED DAESEAMAEV ADALRAVGEG  420
FLRMEERRLE LSLQMEKEWM ESEMKRTQTM LDAQQLFFEA FLGKQQQHKK ARHSPASNAM  480
EED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247RIIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G324200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
GenBankKJ7278520.0KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983621.10.0trihelix transcription factor ASIL1
TrEMBLK4ACS50.0K4ACS5_SETIT; Uncharacterized protein
STRINGSi036682m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-26Trihelix family protein