PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G321800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family STAT
Protein Properties Length: 701aa    MW: 77270 Da    PI: 6.3512
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G321800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT179.25.9e-562293471119
                STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeip 90 
                         l+vvl+nalg+pv kd+evvasL+yad+g++veks dd+e+pLLi+ +G+e+++ +rpl+++rG+a fklkisqLsskcdn+Lfri+f+++
  Sevir.9G321800.2.p 229 LEVVLINALGEPV-KDKEVVASLVYADNGTAVEKSrDDSEPPLLITSEGLEYPAISRPLPIIRGCAIFKLKISQLSSKCDNKLFRIQFSTL 318
                         79**********9.*********************9******************************************************* PP

                STAT  91 klkkypfleavskpirCisrsrntrsssl 119
                         ++++ypfl a+sk irCisr+r+ r++++
  Sevir.9G321800.2.p 319 HMRRYPFLVAYSKTIRCISRTRTIRPLGS 347
                         ************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2007.2E-416142IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498991.04E-633178IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.3E-4593672IPR000980SH2 domain
SuperFamilySSF555501.57E-7596680IPR000980SH2 domain
PROSITE profilePS5000110.315602700IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MAAPESECGG GDAGYLDLRD VRVEVDPGTA RGGGGGGFAV CFWLYLSSSA RPSSVILHQV  60
TTGDGNKLPF LALGEGNRLL LFPLMTLHRE APAPASSYPW TDTTSLSSTN ECPLEKWFHI  120
GCEVTENAMR LHINGNLIAE AHLCSLSDEQ HHQDHANKIS LFGNDSKLEG YIYNIEVSSV  180
LGTIKEQHAK NPPFKLSIDY SSSDGIEEGD DGIWNIVGGK ASCRRNFILE VVLINALGEP  240
VKDKEVVASL VYADNGTAVE KSRDDSEPPL LITSEGLEYP AISRPLPIIR GCAIFKLKIS  300
QLSSKCDNKL FRIQFSTLHM RRYPFLVAYS KTIRCISRTR TIRPLGSGKR VNSATADETD  360
LLNNGQGLVN ADRVNGRLHS HGQSSVVRFH MPKFSKIEGD GMAKVVESNK ILSQNKHARK  420
MVVSKEAQDV MGTDSSTSNY DSFDSGSSWS GSDGDDIETF SDAVVFRYCL DSTYDRSKFL  480
RGAAPTFNKD DLVKLADQVS LYSGCSHHRE GADTWSMISK NNERALWSSA IPGIITKFTD  540
ISHSVNRGLS EQDLEVLRGI AGCGEDIGKD EFDRLWYWLY PVAASLTRDK IKKLWDCTSP  600
RWIEGLITVQ EAENALRSSR ELLKEPGTFV LRFPTTRSWP HPDAGNLVVT YVGSDNSIHH  660
RLLSLDSSVA RAENLQDLLL QEPELSQLGR VDRLPTAIRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G321800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0875991e-34AC087599.14 Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence.
GenBankAP0149661e-34AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-34CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983605.10.0SH2 domain-containing protein B isoform X2
TrEMBLA0A368SMT10.0A0A368SMT1_SETIT; Uncharacterized protein
STRINGSi034463m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-152SH2 domain protein B