PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G273500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 434aa    MW: 48227.2 Da    PI: 4.4806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G273500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.63.6e-172213310128
                 NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlskkge 98 
                         tde lv ++L+++ ++++l+  +++  +d   v+P+d+      +e+ wy   + d++  +  ++  +r+tk+gyWk   +++ + + +++
  Sevir.9G273500.1.p  22 TDEKLV-RFLAERKAKDPLPQ-NILVGLDFSLVDPRDFT-----TEDVWYMKLSDDQHPYNssEDGITRKTKNGYWKFMDSSR-IPT-STA 103
                         899999.99999999999999.88**************7.....56788876666665443125567899*******998865.444.589 PP

                 NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                          +g+k tL fy+g+a  g+kt Wvmhey++
  Sevir.9G273500.1.p 104 IIGVKITLEFYEGHALCGTKTGWVMHEYQV 133
                         9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-2611154IPR003441NAC domain
PROSITE profilePS5100526.613154IPR003441NAC domain
PfamPF023653.7E-1122133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MCLTDPVLAV AALGINIKDS WTDEKLVRFL AERKAKDPLP QNILVGLDFS LVDPRDFTTE  60
DVWYMKLSDD QHPYNSSEDG ITRKTKNGYW KFMDSSRIPT STAIIGVKIT LEFYEGHALC  120
GTKTGWVMHE YQVEHNEEAN LPQDYKSLCK VFLKGEKNIS DEIQQNSDNA DSPKDSFKAY  180
LQYLAKIEEP KQPVDADKQE ISSSKGQNEQ NTQHIADGID IDNVLANEDY IELNDLLYDD  240
DAVRNDALTP EDLDDLLIPQ ASAPTSTNSS KQSSAVHDAL EDLDDLLTPE ASASTSANSS  300
KRSMFSEECF DCDAFLREIL KDSNSNEGEN KDNKFSIAAP TNLVNVVISP SEQGLAKIHD  360
DNAIVAGTSQ HEPFPGGDRD EHSSSGFKQR SPSKSSCFPS RSDSSQSNIK CRREQSSSKF  420
GKIMKKYSCF RSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G273500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678496.10.0NAC domain-containing protein 7
TrEMBLA0A368SL560.0A0A368SL56_SETIT; Uncharacterized protein
STRINGSi036265m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-15NAC domain containing protein 83