PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G271700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 427aa    MW: 45630.9 Da    PI: 6.242
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G271700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.62.2e-105595141
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        k ien  +r  t+ +Rr g+  K + L +LC++e++++ f 
  Sevir.9G271700.1.p 55 KLIENPKKRRATYKNRRDGLVQKTSQLATLCGVEALLVCFD 95
                        569**********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.76E-154797IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-847104IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.7554794IPR002100Transcription factor, MADS-box
CDDcd001202.30E-154997No hitNo description
PRINTSPR004043.4E-54969IPR002100Transcription factor, MADS-box
PfamPF003192.2E-135797IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-56984IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MALTTSKRRG PLPAQHQPLA LKLVARQGVG LREERGAARD LEQTTTMPRG KLGMKLIENP  60
KKRRATYKNR RDGLVQKTSQ LATLCGVEAL LVCFDPKPAG SGQDGGGGGA AAATTWPANR  120
EDVLKLIEKY RETPADKIRH SFNAATYYQE ELAKQQRKLL KIEQCGPDML SLQDCRLADL  180
STADLGTLLV ALDETLRKAQ QRIVALGGHL DDDGGDVLPA ATAMVTAPHA VPMPLPLAEY  240
SSFDLAFAMP DAGSMVTQYD YPPHDMMPLP QPVPLQPPCL AYHQMPLPSY TFQMPPATTT  300
LIAPHDLGMT GTMDFPTFFT NFANGSATAA GFYDDFMLGF DATGGGVYVD DYVAAGQADF  360
AAGHAGTGYQ LEHRMPAGVW APVSRMNNNP GPMDAAAFQE GNDLAGLPGS SCSSNGAIFQ  420
GGFQKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G271700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AK500.0K4AK50_SETIT; Uncharacterized protein
STRINGSi039273m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-11MIKC_MADS family protein