PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G255600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 360aa MW: 37558.5 Da PI: 9.335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G255600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	228	250	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++Fs ++ L+ H + H Sevir.9G255600.1.p 228 SCHPCGEHFSKWEALEAHHLSkH 250 7999**************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	229	250	IPR007087	Zinc finger, C2H2
Pfam	PF14416	1.8E-7	257	289	IPR025846	PMR5 N-terminal domain
Pfam	PF13839	3.5E-9	290	322	IPR026057	PC-Esterase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MRPSNRRLAR GRQPRITASH MEGATWTHAA ACSPTSKPPC CCSWQRGERA HSINHRGRHT 60 TNSGPSSRQL NREAASCTAP SRVRNGGSAG GASSGARGYS AGRVSGGVSG KRRRRGSATD 120 AAASGARAEG RVGGGGGEGS AANGCGGLGA VGTAAAHDAD GNGGPDSGGV SSFVSTLHPG 180 TRGPTTDCPP PRSPNVLLER NGSVSVGHSA SCEDTTQAGI GKGSGGLSCH PCGEHFSKWE 240 ALEAHHLSKH AACGTVETYP VIHDHYDCLR YGRLDLGFVR WWWRPAGCEL PHLDPAWFLR 300 AARGRFMAFV GDSLAKNQMH SLGRNLDKPD AGWAARAGEF DSAGSWFFHP SVFHELSFF*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MRPSNRRLAR GRQPRITASH MEGATWTHAA ACSPTSKPPC CCSWQRGERA HSINHRGRHT  60
TNSGPSSRQL NREAASCTAP SRVRNGGSAG GASSGARGYS AGRVSGGVSG KRRRRGSATD  120
AAASGARAEG RVGGGGGEGS AANGCGGLGA VGTAAAHDAD GNGGPDSGGV SSFVSTLHPG  180
TRGPTTDCPP PRSPNVLLER NGSVSVGHSA SCEDTTQAGI GKGSGGLSCH PCGEHFSKWE  240
ALEAHHLSKH AACGTVETYP VIHDHYDCLR YGRLDLGFVR WWWRPAGCEL PHLDPAWFLR  300
AARGRFMAFV GDSLAKNQMH SLGRNLDKPD AGWAARAGEF DSAGSWFFHP SVFHELSFF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G255600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	2e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G255600.1.p