PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G247200.7.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 364aa    MW: 40970.8 Da    PI: 4.6725
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G247200.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.7e-34471392103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Sevir.9G247200.7.p  47 FLTKTFDLVEDQATDAVVSWSRAGNSFVVWDPHVFADTLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRH 128
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++ikr+k +
  Sevir.9G247200.7.p 129 LLKTIKRRKPS 139
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5943136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.0E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-184770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-188597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDPSAAAAGI VKEELLEQQP LQDGVAGGGR DAPRPMEGLH EVGPPPFLTK TFDLVEDQAT  60
DAVVSWSRAG NSFVVWDPHV FADTLLPRLF KHSNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQRHLL KTIKRRKPSS AVPQSHQQQA PASCLEVGEF GFEEEIDRLK RDKNILITEV  180
VKLRQEQQTT KDHVRAMEER LRVAEQKQVQ MMGFLARAMR NPEFFQQLVQ QQDKRKELED  240
AISKKRRRPI DNTPFYSPGE TSQTEPLDSQ FVFDSGVLDG LSEPGMPELE NLAVNIQELG  300
KGTTDSVKMD QANGQSELND DFWAELLIED FGDKAGQSEL EARPEDVDDL AQQLGYLSSS  360
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26211363129Heat shock factor protein 1
5d5v_B5e-26211363129Heat shock factor protein 1
5d5v_D5e-26211363129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKTIKRR
2233247KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G247200.7.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679240.10.0heat stress transcription factor A-2c isoform X2
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLK4ABP70.0K4ABP7_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]