PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G240800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 328aa    MW: 35223 Da    PI: 5.0075
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G240800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25.1e-2784171271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                         ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+
  Sevir.9G240800.2.p  84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWR 170
                         789********...*****999************************************************************.*******9 PP

             E2F_TDP  71 g 71 
                         g
  Sevir.9G240800.2.p 171 G 171
                         8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.4E-1218326IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.9E-4479177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-3883171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.0E-2585171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-1986172IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.04E-41176279IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-40178288No hitNo description
SMARTSM011383.9E-72178327IPR014889Transcription factor DP, C-terminal
PfamPF087813.9E-41179311IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVSGAGPSSG PAHSASTGAG GGSPSDKGGA APSVSASVST PASESTVARR LNGLDLQADD  60
APSSQPATSK KKKRGARAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD  120
PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI  180
EELKTEIVGL KGRIDKKSAY LQDLQDQYVS LQNLVQRNEQ LYGSGDAPSG GVALPFILVQ  240
TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDSFVLKAMG LSGKEETDGT QAPVANGGEC  300
SSTPNNYWHQ SPQPTRPRGE ARSTVEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3777176193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G240800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365660.0BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
GenBankHQ8587670.0HQ858767.1 Zea mays clone UT1683 E2F-DP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-128DPB_ARATH; Transcription factor-like protein DPB
TrEMBLK4AC690.0K4AC69_SETIT; Uncharacterized protein
STRINGSi036476m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-124Transcription factor DP