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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.9G222300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NAC |
Protein Properties |
Length: 298aa MW: 32539.6 Da PI: 6.6714 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.9G222300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 165.1 | 2.5e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF P+deelv++yL++kv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+
Sevir.9G222300.1.p 10 LPPGFRFYPSDEELVCFYLRNKVANQRVAS-GTLVEVDLHAREPWELPDVAKLTAEEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRV 99
79*************************888.88***************77777889*********************************** PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
v++ ++elvg++ktLvfy+grap+g+kt Wvmhe+rle
Sevir.9G222300.1.p 100 VHEPaTRELVGMRKTLVFYRGRAPNGQKTGWVMHEFRLE 138
**9878889***************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MGLREMDSAL PPGFRFYPSD EELVCFYLRN KVANQRVASG TLVEVDLHAR EPWELPDVAK 60 LTAEEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRVV HEPATRELVG MRKTLVFYRG 120 RAPNGQKTGW VMHEFRLETP NSPPKEDWVL CRVFNKMKLS SEGEETGSSG IHNGHTATVS 180 AEPSSPPPAF LGSLPNPAAA PADRFYQQRQ VTTGSGSSSG TLLMNLQAML QQGSSCFLDY 240 CSPVVHHGAA VGAPHNAGCG DDAAVAMALG HVGFEEHGLG EIEMEYAQAQ GGCGLYF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 1 | 156 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 1 | 156 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 1 | 156 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC181492 | 3e-92 | KC181492.1 Urochloa ruziziensis clone 214913 microsatellite sequence. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] - Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]
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