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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.9G221500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 285aa MW: 30624.2 Da PI: 5.7404 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.9G221500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.8 | 2.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd++lv +++q+G ++W++ +r g+ R++k+c++rw +yl
Sevir.9G221500.1.p 14 RGAWSPEEDQRLVAYIRQHGHPNWRALPRQAGLLRCGKSCRLRWINYL 61
89******************************99************97 PP
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2 | Myb_DNA-binding | 47 | 5.8e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+ l+v+++ +lG++ W++Ia+ ++ gRt++++k+ w+++
Sevir.9G221500.1.p 67 RGNFSADEEALIVRLHLELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111
89********************.*********.***********987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MGRAPCCEKE GLRRGAWSPE EDQRLVAYIR QHGHPNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SADEEALIVR LHLELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLEDDA 120 EANAAAAGGG RPKQQKARKS KPAAAAKKAT AAAAAVSDSS EQQPFTTASP GLSSSVSSGE 180 TTFSTATEST AAVSSGDNAA TTSASPQPGA AKAEMEMESF SSAEFPPIDE SFWSSPDVVD 240 MGLGAMDEEL GLAGPPSLST RDEDMEFWLK MLLEAGDMRD LSVL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679408 | 1e-168 | HF679408.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB2 protein. |
GenBank | JQ255478 | 1e-168 | JQ255478.1 Saccharum hybrid cultivar Co 86032 MYB46 (MYB46) mRNA, complete cds. |