PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G219100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 685aa    MW: 74705 Da    PI: 7.1521
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G219100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24119220199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  Sevir.9G219100.1.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 206
                         89****************************996555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++ +el+v+++r+
  Sevir.9G219100.1.p 207 -RTEHGELCVGIRRA 220
                         .55999*******97 PP
2Auxin_resp118.65.2e-39275358183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ as +++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rW+nS+Wr+L+
  Sevir.9G219100.1.p 275 AASLASRGQPFEVVYYPRASTPEFVVKAASVQNAMRNHWCPGMRFKMAFETEDSSRISWfMGTIASVQVADPIRWSNSPWRLLQ 358
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36110222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-29116223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-21118219No hitNo description
PfamPF023624.9E-22119220IPR003340B3 DNA binding domain
SMARTSM010198.5E-22119221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929119221IPR003340B3 DNA binding domain
PfamPF065079.6E-34275358IPR010525Auxin response factor
PROSITE profilePS5174520.935589667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKEAGDERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHAHGGGAAE LAAAAGPRGL  60
PPLVLCCVAG VRFLADPETD EVFAKIRLVP VAPSGEADLR DPDELGGDPA DAREKLSSFA  120
KTLTQSDANN GGGFSVPRYC AETIFPKLDY RADPPVQTVL AKDVHGEVWK FRHIYRGTPR  180
RHLLTTGWST FVNQKKLVAG DSIVFLRTEH GELCVGIRRA KRVSCGGMEC MSGWNAPGYG  240
AFSAFLKDEE SKMMKGPGGY MRGMGKVKIA DVVEAASLAS RGQPFEVVYY PRASTPEFVV  300
KAASVQNAMR NHWCPGMRFK MAFETEDSSR ISWFMGTIAS VQVADPIRWS NSPWRLLQVT  360
WDEPDLLQNV KCVNPWLVEL VSSIPPIHLG PFSPPRKKLR MPQHPDFPFD GQLLNPVFHG  420
NPLGPSNSPI CCFPDNAPAG IQGARHAQFG LPLTDHQLNK LHLGLFQGSG FNRLDAITPQ  480
SRISKGFVIT SAPVKESVSC LLTIGTPQGT EKSDDRKKPH IMLFGKPILT EQQMNSGGSR  540
ETFSPEVTGN GSSDGNAQKT GNVSDGSGSS ICIGFSSQGR EASELGLEAG HCKVFMESED  600
VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMSHLHYRDA AGAVKHTGEE PFSDFMKVAR  660
RLTITERGEG RLQKPLIEYM VERA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-741038351392Auxin response factor 5
4ldy_A2e-741338322357Auxin response factor 1
4ldy_B2e-741338322357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394400PRKKLRM
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G219100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]