PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G191300.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 583aa    MW: 61467.4 Da    PI: 5.8841
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G191300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix110.51e-34257342187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Sevir.9G191300.3.p 257 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 342
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0078254316IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-4255313IPR009057Homeodomain-like
CDDcd122032.50E-29256321No hitNo description
PROSITE profilePS500907.155256314IPR017877Myb-like domain
PfamPF138375.5E-24256343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MPMALGNQMS FSTSNTEDYS DEEDSDDEGT QELGGGADER GKRKRVSEGG AAAGGSGSGS  60
GSGKMMRFFE GLMKQVMERQ EAMQQRFLEA IEKREQDRMI REEAWRRQEM TRLAREQEIL  120
AQERAMAASR DAAVLSFIQK ITGQTIPMPS IAAPTINAMP PPSHPRPPPP QPHPTPIASA  180
SPAATPAPAQ PPASQPPPAQ QPQPSLPPQR SPMPATPQTP APPQQQSTDI VMTPAETAAH  240
ADTPGYDGSG GGATSSRWPK AEVHALIQLR SNLDTRYQEA GPKGPLWEEI SAGMRRLGYN  300
RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYRNKAAL SSSGAGAGPA  360
AVHASSAPST QAPETVKVTA AAPISQTPPP PTLPSQSSQH AAKNGGGSNA AAGSGNGNGG  420
GASEHGASGG GSGGMQAQAS NGSVAASRFF GDGGGGGSAS AAKKPEDIMK EMMEQRPQPQ  480
AVVSGYNRID GADSDNIDED EDDYDDDDDD EDDVDGNKMQ YEIQFQQRQH HHHHHQQPQQ  540
QHQNVVRPNA GGGGAGNPPG TTAPSTAAAA TTTAGSFLGM VQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G191300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-175BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698336.10.0LOW QUALITY PROTEIN: trihelix transcription factor GTL1
TrEMBLA0A368SJZ60.0A0A368SJZ6_SETIT; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-54Trihelix family protein