PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G191300.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 819aa MW: 85437 Da PI: 6.6143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G191300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.8	2e-30	103	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea Sevir.9G191300.2.p 103 RWPRQETLELLKIRSEMDAAFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 187 8******************************************************************97..56668*****85 PP
2	trihelix	109.8	1.7e-34	493	578	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Sevir.9G191300.2.p 493 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 578 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.2E-4	100	162	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.737	102	160	IPR017877	Myb-like domain
CDD	cd12203	2.45E-28	102	167	No hit	No description
Pfam	PF13837	7.5E-21	102	188	No hit	No description
SMART	SM00717	0.0078	490	552	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-4	491	549	IPR009057	Homeodomain-like
CDD	cd12203	5.17E-30	492	557	No hit	No description
Pfam	PF13837	9.0E-24	492	579	No hit	No description
PROSITE profile	PS50090	7.155	492	550	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MQQQQHGGGG GGGGGGGGGG PAQQFGAQQV EMPPPFSPAG GAGQRISLAE APSPISSRPP 60 APAQQQYDEL GVSSAGAGGF DAEGLAAAAA GEEGASGGSA GNRWPRQETL ELLKIRSEMD 120 AAFRDATLKG PLWEQVSRKL AEKGYTRSAK KCKEKFENVH KYYKRTKESR AGRNDGKTYR 180 FFTQLEALHG TGGAAQAASF VPPATSVGLS SSGAARPSAL RVPAEPPPAV AIGGAGMPMA 240 LGNQMSFSTS NTEDYSDEED SDDEGTQELG GGADERGKRK RVSEGGAAAG GSGSGSGSGK 300 MMRFFEGLMK QVMERQEAMQ QRFLEAIEKR EQDRMIREEA WRRQEMTRLA REQEILAQER 360 AMAASRDAAV LSFIQKITGQ TIPMPSIAAP TINAMPPPSH PRPPPPQPHP TPIASASPAA 420 TPAPAQPPAS QPPPAQQPQP SLPPQRSPMP ATPQTPAPPQ QQSTDIVMTP AETAAHADTP 480 GYDGSGGGAT SSRWPKAEVH ALIQLRSNLD TRYQEAGPKG PLWEEISAGM RRLGYNRNAK 540 RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RNKAALSSSG AGAGPAAVHA 600 SSAPSTQAPE TVKVTAAAPI SQTPPPPTLP SQSSQHAAKN GGGSNAAAGS GNGNGGGASE 660 HGASGGGSGG MQAQASNGSV AASRFFGDGG GGGSASAAKK PEDIMKEMME QRPQPQAVVS 720 GYNRIDGADS DNIDEDEDDY DDDDDDEDDV DGNKMQYEIQ FQQRQHHHHH HQQPQQQHQN 780 VVRPNAGGGG AGNPPGTTAP STAAAATTTA GSFLGMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MQQQQHGGGG GGGGGGGGGG PAQQFGAQQV EMPPPFSPAG GAGQRISLAE APSPISSRPP  60
APAQQQYDEL GVSSAGAGGF DAEGLAAAAA GEEGASGGSA GNRWPRQETL ELLKIRSEMD  120
AAFRDATLKG PLWEQVSRKL AEKGYTRSAK KCKEKFENVH KYYKRTKESR AGRNDGKTYR  180
FFTQLEALHG TGGAAQAASF VPPATSVGLS SSGAARPSAL RVPAEPPPAV AIGGAGMPMA  240
LGNQMSFSTS NTEDYSDEED SDDEGTQELG GGADERGKRK RVSEGGAAAG GSGSGSGSGK  300
MMRFFEGLMK QVMERQEAMQ QRFLEAIEKR EQDRMIREEA WRRQEMTRLA REQEILAQER  360
AMAASRDAAV LSFIQKITGQ TIPMPSIAAP TINAMPPPSH PRPPPPQPHP TPIASASPAA  420
TPAPAQPPAS QPPPAQQPQP SLPPQRSPMP ATPQTPAPPQ QQSTDIVMTP AETAAHADTP  480
GYDGSGGGAT SSRWPKAEVH ALIQLRSNLD TRYQEAGPKG PLWEEISAGM RRLGYNRNAK  540
RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RNKAALSSSG AGAGPAAVHA  600
SSAPSTQAPE TVKVTAAAPI SQTPPPPTLP SQSSQHAAKN GGGSNAAAGS GNGNGGGASE  660
HGASGGGSGG MQAQASNGSV AASRFFGDGG GGGSASAAKK PEDIMKEMME QRPQPQAVVS  720
GYNRIDGADS DNIDEDEDDY DDDDDDEDDV DGNKMQYEIQ FQQRQHHHHH HQQPQQQHQN  780
VVRPNAGGGG AGNPPGTTAP STAAAATTTA GSFLGMVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G191300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061205	0.0	BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698336.1	0.0	LOW QUALITY PROTEIN: trihelix transcription factor GTL1
TrEMBL	A0A2S3IKR8	0.0	A0A2S3IKR8_9POAL; Uncharacterized protein
STRING	OPUNC10G14260.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G191300.2.p