PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G191300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 819aa MW: 85437 Da PI: 6.6143 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.8 | 2e-30 | 103 | 187 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea Sevir.9G191300.1.p 103 RWPRQETLELLKIRSEMDAAFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 187 8********************************************************************97..56668*******85 PP | |||||||
2 | trihelix | 109.8 | 1.7e-34 | 493 | 578 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Sevir.9G191300.1.p 493 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 578 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.2E-4 | 100 | 162 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.737 | 102 | 160 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.45E-28 | 102 | 167 | No hit | No description |
Pfam | PF13837 | 7.5E-21 | 102 | 188 | No hit | No description |
SMART | SM00717 | 0.0078 | 490 | 552 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 491 | 549 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 5.17E-30 | 492 | 557 | No hit | No description |
Pfam | PF13837 | 9.0E-24 | 492 | 579 | No hit | No description |
PROSITE profile | PS50090 | 7.155 | 492 | 550 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MQQQQHGGGG GGGGGGGGGG PAQQFGAQQV EMPPPFSPAG GAGQRISLAE APSPISSRPP 60 APAQQQYDEL GVSSAGAGGF DAEGLAAAAA GEEGASGGSA GNRWPRQETL ELLKIRSEMD 120 AAFRDATLKG PLWEQVSRKL AEKGYTRSAK KCKEKFENVH KYYKRTKESR AGRNDGKTYR 180 FFTQLEALHG TGGAAQAASF VPPATSVGLS SSGAARPSAL RVPAEPPPAV AIGGAGMPMA 240 LGNQMSFSTS NTEDYSDEED SDDEGTQELG GGADERGKRK RVSEGGAAAG GSGSGSGSGK 300 MMRFFEGLMK QVMERQEAMQ QRFLEAIEKR EQDRMIREEA WRRQEMTRLA REQEILAQER 360 AMAASRDAAV LSFIQKITGQ TIPMPSIAAP TINAMPPPSH PRPPPPQPHP TPIASASPAA 420 TPAPAQPPAS QPPPAQQPQP SLPPQRSPMP ATPQTPAPPQ QQSTDIVMTP AETAAHADTP 480 GYDGSGGGAT SSRWPKAEVH ALIQLRSNLD TRYQEAGPKG PLWEEISAGM RRLGYNRNAK 540 RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RNKAALSSSG AGAGPAAVHA 600 SSAPSTQAPE TVKVTAAAPI SQTPPPPTLP SQSSQHAAKN GGGSNAAAGS GNGNGGGASE 660 HGASGGGSGG MQAQASNGSV AASRFFGDGG GGGSASAAKK PEDIMKEMME QRPQPQAVVS 720 GYNRIDGADS DNIDEDEDDY DDDDDDEDDV DGNKMQYEIQ FQQRQHHHHH HQQPQQQHQN 780 VVRPNAGGGG AGNPPGTTAP STAAAATTTA GSFLGMVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G191300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061205 | 0.0 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698336.1 | 0.0 | LOW QUALITY PROTEIN: trihelix transcription factor GTL1 | ||||
TrEMBL | A0A2S3IKR8 | 0.0 | A0A2S3IKR8_9POAL; Uncharacterized protein | ||||
STRING | OPUNC10G14260.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-53 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G191300.1.p |