![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.9G180500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
MYB |
Protein Properties |
Length: 466aa MW: 49339.8 Da PI: 6.1546 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.9G180500.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Svi&pid=Sevir.9G180500.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WTt Ed lvd v+++G g+W+++ r g+ R++k+c++rw ++l
Sevir.9G180500.1.p 47 KGPWTTAEDAMLVDHVRRHGEGNWNAVQRLTGLLRCGKSCRLRWTNHL 94
79******************************99***********996 PP
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2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 100 | 143 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
Sevir.9G180500.1.p 100 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 143
799*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MERSPGAALT SSPEEEEEKT ADGHAGEEAA AEQEQEEEAA APVVLKKGPW TTAEDAMLVD 60 HVRRHGEGNW NAVQRLTGLL RCGKSCRLRW TNHLRPNLKK GSFSPDEELL IAQLHAQLGN 120 KWARMAAHLP GRTDNEIKNY WNTRTKRRQR AGLPVYPPEV QLQLALAKRR RYDELSPLSG 180 TAVNVQGALD AAAAAAGYTS SRPAPLDLAR QLAATSQTVQ FLSPTPFSAP SSPWAKPFAR 240 NAQYFQLAHS SPVSPSTPTG PLHPVTPDLS LGYGVRGADQ QSRLAPLSPS PGPRVELPSN 300 QFGQAMPPTS AAAAGLGGGA ALPDQHQNAA SLEKMLQELH DAIKVDPPAL APANGDAARP 360 GGGSGAVLER HGGRENKSGG QHRVDDMETL FDLMIPTLNA PETVQVPPAA APNHSSSTSQ 420 HSSDDQDPST VDLGVDLPVA GGGGSSDQDW GLDGVCQWSN MSRIC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT042537 | 0.0 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. |
GenBank | KJ727532 | 0.0 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |